Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5212 ATGCCTAATCCTAACTGTTTTTCACCCCAAACAAACCTCACTAACTATTTTTCTCTTTCTTTCACAATTCAGAAAAATGCAAAACCGTTTTTGTATATAAACCATGAGTTTGTTATTGATCCATCATTTTCAGTAGTCATGGAAAACCCTTCACGCTTTTCAACTACCATTGCTTCAGAAATGGGTAACACAAAACGTGCTCGAGAAATGGGTGCTACTACAAAACCTGAAGAAGTTCTTAAAGTTGAACGTGAACGAAGGAAGAAAATGGCTCAAATGTTCAATCACCTTGCTTCCACTGTTCCTGCTCTTTTTCCTACGGCTACTAGGGAAGTGATTATAAATGAAACAATCGGGTACATTAAGGAACTTGAGAAGAAGAAGAAAATGTTAGAGGAGATTAAGGAATCGAAGGTTGAAGGGAGTTTCAATTTGTTGGTTCCGTGTCGGAACAGAAATTGCTCTGTTTCTGTTACGGTTTCTAACAATGTGGCTTTCTTTGGGATTGAATCGGTGGCTAAACGTGGTTTGGTTACTGTGATTTTGGAGGTGTTTTTTAATAATCACACTGAGATTTTAGCTGCTAATGTTTCTGTTAATGATGGGAATTTGAGATTGGCGATTACTGCGTTGGTTCAGAATGGTCATGATCATGAGAAGATTAAGAGGGAGATTATGAATTTGTAG 687 0.3755 MPNPNCFSPQTNLTNYFSLSFTIQKNAKPFLYINHEFVIDPSFSVVMENPSRFSTTIASEMGNTKRAREMGATTKPEEVLKVERERRKKMAQMFNHLASTVPALFPTATREVIINETIGYIKELEKKKKMLEEIKESKVEGSFNLLVPCRNRNCSVSVTVSNNVAFFGIESVAKRGLVTVILEVFFNNHTEILAANVSVNDGNLRLAITALVQNGHDHEKIKREIMNL* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5212 228 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 56 226 - -
Psa4g5212 228 Gene3D - 70 139 IPR036638 GO:0046983
Psa4g5212 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 124 IPR011598 GO:0046983
Psa4g5212 228 SMART finulus 80 130 IPR011598 GO:0046983
Psa4g5212 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 141 IPR036638 GO:0046983
Psa4g5212 228 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 56 226 - -
Psa4g5212 228 Coils Coil 121 141 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5212 49 142 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.375 6.80e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g5212 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5212 - - cam:101491921 194.897