Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5204 ATGCATGGGAAAAAAGAGCAAGAACATGTGAAGAAAGGTCCATGGAAAACAGAAGAAGATGATGTTTTACTTCACCATGTTAAGAAATATGGTCCAAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAAAGAACTGGCAAGTCTTGTCGTCTTCGTTGGGTTAATAAGCTTCGACCAAACCTCAAAAATGGATGTAAGTTTGCAATAGAAGAAGAGAGGATTGTGATAGAGTTGCAGGAACAATTTGGGAACAAATGGGCCAAGATTGCATCCTATTTACCAGGAAGAACAGACAATGATGTCAAAAATTTCTGGAGCAGTAGACAAAAGAGGTTGGCTAGGCTTCTCAAAACATCATCGTCAACATCAACCTCAAAGTCACACAAAACCAAAGCCAAAGTTTCTTCCCATGTTCCAACTTCAGAGGTTCCTTATAAGTTCAGTTCTTCATCAGAGGGAGAAACATCATCAAAGCCTAAGCCGTGTGAATTACCCTGCATTGAAAAATCTGCTGAGGTTATCAAAATGGTGCCACTACAAGATCTTACAAAATCCGAAAAGCCGAGTATCGATGCAAACTATGTCGAGCAAGACTTAACCCCTTTTGATCAGAGCTACAAAAGTACTGAACACATTGCGTTTCCTCAGATTCCCGAACTCCAAACTGATCTTACTTTTCCAATGTCAAGAGTTGATGAACAAAATATATTTGATGTTTTCGATCCCTTGTATTCATCTGAGTTTGGAATGGTTCCTTTCTTCGAGCCATCTGGGAGTTGCAGAATCGGGAATATGGATACAAATGTTGATTTCTCAACAAACATAGATAGTTTCTTTGATGATTTTCCTGAAGACATGTTTGGTTACATTGATCCACCTGCAAGTCCATCTAATATCTGA 906 0.3929 MHGKKEQEHVKKGPWKTEEDDVLLHHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFAIEEERIVIELQEQFGNKWAKIASYLPGRTDNDVKNFWSSRQKRLARLLKTSSSTSTSKSHKTKAKVSSHVPTSEVPYKFSSSSEGETSSKPKPCELPCIEKSAEVIKMVPLQDLTKSEKPSIDANYVEQDLTPFDQSYKSTEHIAFPQIPELQTDLTFPMSRVDEQNIFDVFDPLYSSEFGMVPFFEPSGSCRIGNMDTNVDFSTNIDSFFDDFPEDMFGYIDPPASPSNI* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5204 301 MobiDBLite consensus disorder prediction 118 140 - -
Psa4g5204 301 CDD SANT 72 107 IPR001005 -
Psa4g5204 301 SMART sant 65 113 IPR001005 -
Psa4g5204 301 SMART sant 11 61 IPR001005 -
Psa4g5204 301 PANTHER TRANSCRIPTION FACTOR DUO1 4 300 - -
Psa4g5204 301 Pfam Myb-like DNA-binding domain 72 107 IPR001005 -
Psa4g5204 301 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Psa4g5204 301 Gene3D - 68 140 - -
Psa4g5204 301 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Psa4g5204 301 Gene3D - 3 65 - -
Psa4g5204 301 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Psa4g5204 301 CDD SANT 14 59 IPR001005 -
Psa4g5204 301 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Psa4g5204 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Psa4g5204 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5204 Psa-Chr4 444804602 444806115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5204 1 298 MYB Transcription Factor Family AT3G60460 46.130 4.90e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa4g5204 Myb_DNA-binding 2.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5204 K09422 - gmx:100818656 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5204 4 444804602 444806115 Psa4g5204 4 444804602 444806115 ECH