Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5189 ATGGGTGAGAAAGATGATGAGTTTAGTTTGGGTTTGAGCTTGAGTTTAGGTTGTGGAGAATATGAAAATAATAAAACCAAAAACAAAACTCCTATGAATGTTATGCAGAAACCTCTTCAATCTGTTCCAAACCAAAGGGTTTCCTTCAATAACTTGTTCCAGTTTCATGATCTCAGTAGCGAAACGAGGTCGTTTCTCCGTGGAATCGATGGGAACTCGCTGCGACCGTCTGCGGCGGCGGTGTTTGATGATGAGAACGGAGTTTCGTCCCCGAATAGCACTGTGTCGAGTATAAGTGGAAAACGGAGCGAAAGAGAAGGAAATGGAGATGAAAACGATGCTGTTGAGAGGGCTTCGTGTTCTCGTGGTGGAAGCGACGATGATGAAGGTGGAGGATGCGGCGGCGACGGTGAATCATCGAGGAAGAAGCTGAGATTGTCGAAGGAACAGTCACTGTTGCTGGAAGAAACTTTCAAAGAGCACAACACACTGAATCCGAAACAAAAGCAAGCATTGGCGAAACAGTTGAGTCTGAAGCCTAGACAAGTGGAGGTGTGGTTCCAAAACAGGAGAGCAAGGACCAAGTTGAAGCAAACTGAGGTGGATTGTGAATATCTGAAGAGATGCTGTGAGACTCTAACTGAAGAGAATAGAAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCTCCACAACTTTATATGCAGATGAACCCTCCCACCACTCTTACAATGTGTCCTTCGTGCGAGCGTGTTGCCGTGTCATCCGCGTCCTCCTCATCAGCAGCCGCACCCTCTGCTTCAACTCCAGCTAACCGCAATCCGTTAGGCCCGAGCGTTCAACGGCCAGTACCTGTCAATCCTTGGGCGGCCATGTCTCTCCAAAACCGTTCCCGGTCTTGA 912 0.4781 MGEKDDEFSLGLSLSLGCGEYENNKTKNKTPMNVMQKPLQSVPNQRVSFNNLFQFHDLSSETRSFLRGIDGNSLRPSAAAVFDDENGVSSPNSTVSSISGKRSEREGNGDENDAVERASCSRGGSDDDEGGGCGGDGESSRKKLRLSKEQSLLLEETFKEHNTLNPKQKQALAKQLSLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSAAAPSASTPANRNPLGPSVQRPVPVNPWAAMSLQNRSRS* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5189 303 Pfam Homeodomain 141 195 IPR001356 GO:0003677
Psa4g5189 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 8 297 - -
Psa4g5189 303 MobiDBLite consensus disorder prediction 80 145 - -
Psa4g5189 303 Coils Coil 203 233 - -
Psa4g5189 303 ProSitePatterns 'Homeobox' domain signature. 172 195 IPR017970 GO:0000981|GO:0006355
Psa4g5189 303 SMART halz 197 240 IPR003106 GO:0006355|GO:0043565
Psa4g5189 303 MobiDBLite consensus disorder prediction 103 124 - -
Psa4g5189 303 CDD homeodomain 141 198 IPR001356 GO:0003677
Psa4g5189 303 MobiDBLite consensus disorder prediction 86 102 - -
Psa4g5189 303 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Psa4g5189 303 PANTHER - 8 297 - -
Psa4g5189 303 Pfam HD-ZIP protein N terminus 1 106 IPR006712 GO:0005634
Psa4g5189 303 Gene3D - 133 202 - -
Psa4g5189 303 MobiDBLite consensus disorder prediction 260 279 - -
Psa4g5189 303 SUPERFAMILY Homeodomain-like 127 198 IPR009057 -
Psa4g5189 303 Pfam Homeobox associated leucine zipper 197 231 IPR003106 GO:0006355|GO:0043565
Psa4g5189 303 ProSiteProfiles 'Homeobox' domain profile. 137 197 IPR001356 GO:0003677
Psa4g5189 303 MobiDBLite consensus disorder prediction 260 303 - -
Psa4g5189 303 SMART HOX_1 139 201 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5189 Psa-Chr4 444401149 444404513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5189 48 300 Homeobox Transcription Factor Family AT3G60390 64.773 4.27e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa4g5189 HD-ZIP_N 9.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5189 K09338 - gmx:100798480 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5189 4 444401149 444404513 Psa4g5189 4 444401149 444404513 ECH