Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5181 ATGGAGCGAAGAAGATGCTTCGGTATTGGTCCTGGAGACATAGTTAGCATCAAGCTAGGGACATCATTCCTGCGACGCACGTCTCCTGAAGGCGATCCTTTGAAGATTGATCAGGTTAGCAAAGGTGCACCAGAGCAGATTCTCAATCTTGCACAAAACAAGGCAGAAATCGAACGGAAGGTTCATGCGATGATTGACAAATTTGCAGAACGTGGACTTCGTTCTCTTGGATTGCAAGACAGGAAGTACCGGAGGAAGTTAGGAAAGTGCAGAGGACCATGGGAGTTTGTTGCTCTTCTCCCTCTTTTTGACCCTCCGAGACATGATAGCGCAGAAACAACAGAAGAGCTCTTGATCTTGGCGTTAGTGTCAAATGATCACTGGCGTCTAGGGATGGGGACTAACATGTATCCTTCTTCATCACTGCTCGGTGAAAATAAAGATCAATTAGGTGCTGTTTCCATTGATGATCTCATTGAGAAAGCTGATGGTTTTGCTGGTGTCTTTCCTGAGCACAAGTATGAGATTGTGAAGAGGTTACAAGCTAGAAAGCACATTTGCGGGATGACTGGTGATGGAGTAAATGATGCACCTGCCTTAAAGATAGCTGACATAGGTATTGCAGTAGCAGATTCTACAGACGCTGCGCGAAGTGCTTCTGACATAGTGCTGACAGAACCTGGTTTAAGTGTCATCATAAGTGCAGTTTTAACTAGCCGCGCAATTTTTCAGAGGATGAAGAACTACACAATATATGCCGTATCTATCACTATTCGTATAGTGCTAGGTTTCATGTTACTCAACAGCTTTTGGAGTTTTGACTTTCCACCATTTATGGTTCTTATCATTGCCATTCTCAATGATGGTACCATCATGACAATATCTAAAGATAGGGTTAAGCCTTCTCCACTCCCTGATAGTTGGAAGCTAAGTGAAATTTTCGCAACTGGGGTTATTCTTGGAACCTATCTGGCTCTAATGACAGTGATCTTCTTCTATATAGTTTTCGAAACAAATTTCTTTCCTGACCATTTTGGAGTGAAACACTTCCGCCCCGATCTACACGCTCCTGTCACTGAAGAAATGAAAGCGATGCTGGCTTCAGCTGTCTATCTTCAAGTCAGTACAATTAGTCAAGCCTTAATCTTTGTGACACGGTCCAGGGGATGGTCCTATACAGAAAGACCGGGTCTTTTGCTTGTTTTTGCCTTTGTTATTGCTCAGCTGGTTGCAACTGTTATATCAGCAGAGGCCAATTGGGAAATTGCGGGAATAAGAAGCATAGGTTGGGGCTGGGCAGGAGTCATTTGGTTGTTCAATACTGTAACTTATGTTTTTCTTGATCCTTTAAAGTTTGCCGTTGCTTATCAACAAAGCGGAAGGGCTTGGAATCTGGTCGTAAACCAAAGAACTGCATTTACCAACAAAAATGATTTCGGTAAAGAATCTCGCGAGGCTGCATGGGCTGCTGAGCAGAGAACCTTGCACGGTCTTCGCTCTGTTGAGTTGAAAGGGTTTGCGGAGAAGCACAACCATAGAGAAATGAATACAATGGCAGATGAAGCTAAGAGGCGAGCAGAGTTAGCAAGGTTGAGAGAGCTTCACACTCTGAAAGGAAGAGTGGAATCGTTTGCCAAACTAAGGGGTTTGGACATTGATATGAATGGACACTACACTGTTTAA 1683 0.4367 MERRRCFGIGPGDIVSIKLGTSFLRRTSPEGDPLKIDQVSKGAPEQILNLAQNKAEIERKVHAMIDKFAERGLRSLGLQDRKYRRKLGKCRGPWEFVALLPLFDPPRHDSAETTEELLILALVSNDHWRLGMGTNMYPSSSLLGENKDQLGAVSIDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADSTDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLNSFWSFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFATGVILGTYLALMTVIFFYIVFETNFFPDHFGVKHFRPDLHAPVTEEMKAMLASAVYLQVSTISQALIFVTRSRGWSYTERPGLLLVFAFVIAQLVATVISAEANWEIAGIRSIGWGWAGVIWLFNTVTYVFLDPLKFAVAYQQSGRAWNLVVNQRTAFTNKNDFGKESREAAWAAEQRTLHGLRSVELKGFAEKHNHREMNTMADEAKRRAELARLRELHTLKGRVESFAKLRGLDIDMNGHYTV* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5181 560 Pfam haloacid dehalogenase-like hydrolase 56 204 - -
Psa4g5181 560 PRINTS P-type cation-transporting ATPase superfamily signature 98 109 - -
Psa4g5181 560 PRINTS P-type cation-transporting ATPase superfamily signature 190 209 - -
Psa4g5181 560 PRINTS P-type cation-transporting ATPase superfamily signature 213 225 - -
Psa4g5181 560 PANTHER CALCIUM-TRANSPORTING ATPASE 35 541 - -
Psa4g5181 560 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 165 267 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g5181 560 Gene3D - 177 457 - -
Psa4g5181 560 Gene3D - 510 560 - -
Psa4g5181 560 PRINTS H+-transporting ATPase (proton pump) signature 61 79 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g5181 560 PRINTS H+-transporting ATPase (proton pump) signature 162 178 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g5181 560 PRINTS H+-transporting ATPase (proton pump) signature 190 206 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g5181 560 PRINTS H+-transporting ATPase (proton pump) signature 221 246 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g5181 560 PRINTS H+-transporting ATPase (proton pump) signature 371 392 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g5181 560 SUPERFAMILY Calcium ATPase, transmembrane domain M 239 454 IPR023298 -
Psa4g5181 560 SUPERFAMILY HAD-like 60 237 IPR036412 -
Psa4g5181 560 Gene3D - 27 103 IPR023299 GO:0000166
Psa4g5181 560 PANTHER PLASMA MEMBRANE ATPASE 35 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5181 Psa-Chr4 444290876 444294917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5181 35 560 Primary Pumps ATPases AT5G62670 69.686 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5181 K01535 - gmx:100806187 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5181 4 444290876 444294917 Psa4g5181 4 444290876 444294917 ECH