Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5180 ATGAATCTCGAAGCTACGACTCTTGAATCCGATCTCGCTTTTCTCGATTCAATTCAACGCTACCTTCTCAACGACCACCACGACTTCAATCCTCTCGCCGCTGTTTCTGCCGCATCTCACGGCGTTGCTCCATCTTCTCCCACCAACAGCGGCAGTACTAGTAGTGGTTCAACGCTAACAACTCTTCACTGTGACGTTGCCAACGCGCCTCTGATGCATCGTGAAGTTCACGCGCCTCCTTGTCGGCAGAAGTATAAGGGAGTGAGGCGAAGGCCGTGGGGAAAGTTTGCGGCTGAAATTAGAGATCCGAAAAAGAATGGCGGAAGGGTGTGGCTTGGGACTTTTCAGTCGGCTGAGGATGCGGCTTTGGCTTATGACCGAGCCGCTTTTAATATGCGTGGCTCAAAGGCTAAGGTTAACTTTCCACATTTGATTGGCTCTGATGTTTCAGAGCCGATGAGAGTGACTGGTAAGCGGCGTGAGCTGGAGCAGTGTTCTTCATCGCGGGTGGTTTTAGAGCCGAAAAGAAAAATTAGCCGAGTCAGTGTCTATAATAATACTTTATTATGA 570 0.4965 MNLEATTLESDLAFLDSIQRYLLNDHHDFNPLAAVSAASHGVAPSSPTNSGSTSSGSTLTTLHCDVANAPLMHREVHAPPCRQKYKGVRRRPWGKFAAEIRDPKKNGGRVWLGTFQSAEDAALAYDRAAFNMRGSKAKVNFPHLIGSDVSEPMRVTGKRRELEQCSSSRVVLEPKRKISRVSVYNNTLL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5180 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 7 167 - -
Psa4g5180 189 SUPERFAMILY DNA-binding domain 84 143 IPR016177 GO:0003677
Psa4g5180 189 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Psa4g5180 189 PRINTS Ethylene responsive element binding protein signature 124 144 IPR001471 GO:0003700|GO:0006355
Psa4g5180 189 PANTHER DNA-BINDING DOMAIN 7 167 IPR044808 GO:0003700|GO:0009873
Psa4g5180 189 Pfam AP2 domain 84 134 IPR001471 GO:0003700|GO:0006355
Psa4g5180 189 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Psa4g5180 189 CDD AP2 83 144 IPR001471 GO:0003700|GO:0006355
Psa4g5180 189 Gene3D AP2/ERF domain 83 143 IPR036955 GO:0003700|GO:0006355
Psa4g5180 189 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5180 Psa-Chr4 444241964 444243240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5180 77 177 AP2-EREBP Transcription Factor Family AT2G44840 66.346 1.08e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa4g5180 AP2 5.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5180 K09286 - gmx:100527194 155.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5180 4 444241964 444243240 Psa4g5180 4 444241964 444243240 ECH