Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5179 ATGAACACTCATGGATGGAGCAACAATGCAAACGCCTTTGAAAATTTTGAATCTTCCATAACGACACCTTTTCATGACACTTCAGCTCCTGTAGCAGCGGTGGTGGCGCCAATCTCCCGGAATCCCAGTTTTCGTAGCATTTTATTGGCGGAGAATTGGGCGGAGCTACCGTTGAAGGAGGATGATACTGACGACATGGTCATCTACGGGACTTTGCGTGAGGCTGCTGCTACAACAGGTTGGTTCCCCGGTAACACGGTGAACAATGCTGATGTAGGCGTGAAAATTGAAGATCAAGGTGAAAACAGTAGCGCTGCAGCGGCGCCTGTGGTTCACGCGCCACCAACTAATGGTAAGAAGTTAGGCTTCCGTGGAGTTAGGAGAAGGCCTTGGGGAAAGTATGCTGCTGAGATAAGAGATCCTAAGAAAAACGGTGCGAGGGTGTGGCTTGGGACTTACGAAACTGCTGAGAATGCAGCTTTGGCTTATGATCGAGCTGCATTTAAGATACACGGCTCGAAAGCTAAGCTGAATTTTCCTCACTTGATCGATTCAGATTACACTGGATTGGTTAAGATCAAGCGAAATGGACGCTAG 597 0.4824 MNTHGWSNNANAFENFESSITTPFHDTSAPVAAVVAPISRNPSFRSILLAENWAELPLKEDDTDDMVIYGTLREAAATTGWFPGNTVNNADVGVKIEDQGENSSAAAAPVVHAPPTNGKKLGFRGVRRRPWGKYAAEIRDPKKNGARVWLGTYETAENAALAYDRAAFKIHGSKAKLNFPHLIDSDYTGLVKIKRNGR* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5179 198 Gene3D AP2/ERF domain 122 181 IPR036955 GO:0003700|GO:0006355
Psa4g5179 198 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Psa4g5179 198 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Psa4g5179 198 Pfam AP2 domain 122 172 IPR001471 GO:0003700|GO:0006355
Psa4g5179 198 PANTHER BNAC04G53270D PROTEIN 29 195 - -
Psa4g5179 198 SMART rav1_2 122 186 IPR001471 GO:0003700|GO:0006355
Psa4g5179 198 ProSiteProfiles AP2/ERF domain profile. 122 180 IPR001471 GO:0003700|GO:0006355
Psa4g5179 198 CDD AP2 123 182 IPR001471 GO:0003700|GO:0006355
Psa4g5179 198 SUPERFAMILY DNA-binding domain 122 181 IPR016177 GO:0003677
Psa4g5179 198 PANTHER DNA-BINDING DOMAIN 29 195 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5179 Psa-Chr4 444203893 444205062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5179 40 194 AP2-EREBP Transcription Factor Family AT2G44840 57.051 5.74e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa4g5179 AP2 6.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5179 K09286 - gmx:100793366 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5179 4 444203893 444205062 Psa4g5179 4 444203893 444205062 ECH
Psa4g5179 4 444203893 444205062 Psa3g2289 3 199317591 199319610 PCT