Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5171 ATGATTCATCATCATCATCTTACTCTTTCCAAATCAATTCAATTCATCCTTGTTTTCTGTACTCTCTATTTTCTTTCATTTGTCGCCTTTGCAGATCCCCCATATGAAACGTGTTCCACACGGAACATCTATACAAATCGAAGTTCGTTTGAGAACAATCTAAGCAACCTCCTTCTCTCTTTACCCTCTAATGTTTCAGCTTCAATCTCCAAATTTGGTAATACTTCTTCAGGAATTGGCCTAGATAGAGTTTATGGTCTCTACATGTGCCTTGACTTCGTTTCAAACGAAACTTGCCACAAATGTGTAGCAAACGCAATAGAAGACATTGTAAAACTCTGTCCTCAATCAGATGAAGCAGTTGTATATGAAGAATTCTGTCAATTACGTTATTCAAATAAAAATTTCATAGGCTCCTTGAACATTACCGGGAACATTGGGAAAGATAATGTACAGAACATTTCGGAACCTGAGAAATATGAGTCTGTTGTGAATAAAATATTGAATAATCTTACTGAGATAGCGTCTTTTAATGTTTCCACGAACATGTATGCTACTGGAAAAGTAGCTTTTGAAGATAAGACAGTATATGCTTTAGTGCAGTGTACAAGAGATTTATCAGCCAATGATTGCAGTAAGTGTCTGCAAAGTGCTATTGGAGATATACCAAGTTGTTGTTATGCCTCCATTGGTGCAAGAGTTTGGAGTCGTAGCTGTTATTTAAGATATGAGTTTTATCCATTTTATCTCGGTGAAATAGAATCCACAAGTTCTTCAACTAACCAAGGAGGGAAAAATAAATCAAGCAAAATATGGATGATTACTGCTATTGCAGTTGGGGTAGTCTTGGTGATAATAATTATCATTTTCTACTTATGCTTTATCAGAAATTGGCAAAGAAAGAACGGACAAGGTAATATATCTAATAATTTCCCTTTTATTGATATTGGTTCTCTTTGCGTGGCTACCAAAAACTTCTCCGATTCAAATAAGCTCGGGCAAGGTGGATTTGGTCCTGTTTACAAGGGTATACTTAGTGATGGCATGGAAGTGGCAATCAAGAGGCTCTCAAACTTGATTTGTGTCGATGGAGAAGAGAAGCTTCTTGTTTATGAAAATTTGCCCAATGGTAGCCTTGATGTCGTCCTTTTGATTTCAGACTTTGGCATGGCAAGGATATTTGCAGGAAGTGAAGGCGAAGCTAACACTACCACAATAGTTGGCACATATGGATATATGGCTCCAGAATATGCAATGGAGGGTCTATATTCCATAAAATCCGATGTTTTCGGCTTTGGAGTACTATTGCTTGAGATCATTACAGGTAAACGTAACGCTGGTTTCTGTTACTCCAAAAGCACTTCTAGTCTACTAGCTTATGCATGGCATCTATGGAATAATGGAAAGGGATTGGAATTAAGGGATCCGTTGTTGTTATCATGTCCCGAAGACCAGTTTCTGACATACATGAATATTGGATTGCTATGTGTTCAAGAAGATGCATATGATAGACCAACCATGTCTTCTGTTGTTTTGATGTTGATGAATGAATCAGTAATGCTTTGCCAACCTGAAAAACCTCCTTTCTCGGTAGGGAGACTCAATGTCATTGATCCAAATGTTCTAGATTTGGAAGAATACTCAGTCAATCTGTTAACTATTTCTGATATCTTGCCCGTGTAA 1683 0.3737 MIHHHHLTLSKSIQFILVFCTLYFLSFVAFADPPYETCSTRNIYTNRSSFENNLSNLLLSLPSNVSASISKFGNTSSGIGLDRVYGLYMCLDFVSNETCHKCVANAIEDIVKLCPQSDEAVVYEEFCQLRYSNKNFIGSLNITGNIGKDNVQNISEPEKYESVVNKILNNLTEIASFNVSTNMYATGKVAFEDKTVYALVQCTRDLSANDCSKCLQSAIGDIPSCCYASIGARVWSRSCYLRYEFYPFYLGEIESTSSSTNQGGKNKSSKIWMITAIAVGVVLVIIIIIFYLCFIRNWQRKNGQGNISNNFPFIDIGSLCVATKNFSDSNKLGQGGFGPVYKGILSDGMEVAIKRLSNLICVDGEEKLLVYENLPNGSLDVVLLISDFGMARIFAGSEGEANTTTIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGFCYSKSTSSLLAYAWHLWNNGKGLELRDPLLLSCPEDQFLTYMNIGLLCVQEDAYDRPTMSSVVLMLMNESVMLCQPEKPPFSVGRLNVIDPNVLDLEEYSVNLLTISDILPV* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5171 560 Gene3D Phosphorylase Kinase; domain 1 295 359 - -
Psa4g5171 560 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 360 384 - -
Psa4g5171 560 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 385 557 - -
Psa4g5171 560 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 81 357 - -
Psa4g5171 560 ProSiteProfiles Gnk2-homologous domain profile. 142 248 IPR002902 -
Psa4g5171 560 ProSiteProfiles Gnk2-homologous domain profile. 32 136 IPR002902 -
Psa4g5171 560 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 360 384 - -
Psa4g5171 560 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 81 357 - -
Psa4g5171 560 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 385 557 - -
Psa4g5171 560 Gene3D - 146 248 IPR038408 -
Psa4g5171 560 Gene3D - 32 136 IPR038408 -
Psa4g5171 560 ProSiteProfiles Protein kinase domain profile. 140 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g5171 560 Pfam Salt stress response/antifungal 152 245 IPR002902 -
Psa4g5171 560 Pfam Salt stress response/antifungal 38 133 IPR002902 -
Psa4g5171 560 Gene3D Transferase(Phosphotransferase) domain 1 360 523 - -
Psa4g5171 560 SUPERFAMILY Protein kinase-like (PK-like) 309 546 IPR011009 -
Psa4g5171 560 Pfam Protein tyrosine and serine/threonine kinase 383 512 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5171 Psa-Chr4 443972651 443975256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5171 12 529 Receptor kinase-like Gene Family AT4G05200 34.810 6.97e-101 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa4g5171 PK_Tyr_Ser-Thr 8.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5171 - - gmx:102669364 682.559