Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5170 ATGGACAAAGATAAAATTTCTTCAGCTATGATTATGTTAATCATTTTAGTGTTAAAATCTCTCAACTTTGTTTCTGGTACAGACAATCCTATAGATACATATTGTCCTGATAATTTTCCATTTTACACTTCCAACACTTCATTCCACAAGAATCTCGAGCTTCTCATGAAAACTCTATCTTCCAACATAGTAGCTTCAAACACAAGTTTCTTCAACAACACATCAACAGGAGAAGGACTAGAAAAAGTTTATGGACAAGCACTATGCAGAGGGGACATAACAAATTCCACAGTTTGTAATGAATGCATTGAGAAAGCAAGTAAGGATTTAATGAATAGGTGTAAGAGTGAGGATGCAATGATATGGTATGAACTTTGTCAAGTTCGGTATTCGTTTCAGATGTTCTTTACAAACGCGGTTTACACTGGAAAATATCCAAAGCAGAATGATCTAGAGAAGCGCGTTTCAGATCCTACTAGTTTTCAACAGGTTTTGAATTATTTAATGAACAATATCTCAAATGAGGCTGCTTTTAGCCCTTCTAAGAACATGTTTGCAACAGCAGAAATCGAATTTTCCGTCAAGAAAAGAATTTATGGACTTGCCGAATGTACGAAGGACATTTCTGAAACTGAATGCAGAAGTTGTTTGAGTTCTGCAATTACAGAACTCAACCAATGCTGCTCATACAGGGAAGGAGGGATTATTGTTAGTCGCAATTGCAACGTTAGATTCGATCAGTTTGAATTTTTTAATGCTTCTTCATTATCAGCATCCCTTCTGATTTTCCCAACTTCCAAAGAAGGAAAATGGAAGCCATGGATGTTTATCTTGACTATAAGTGGCTCAGTTTTAACATTAACAGCTTTTATCGGGCTGTGCACTACTTGCCTCAGGAAGAAAAAGGACAGAGAAAGAGACGAAGAAAAAAGCGATAGGACGCTATTACAAGAGTTGTCTAGCAGTAAGAATGTAGTAATCACACAAGAAGGTCAATTGGTTAGTTCTGATGAAAAGATGTTTATGACTTTAGCAACCATTAAGGCGGCTACCGGTGAATTTTCGGATAAAAATAGGTTGGGACAAGGAGGGTTTGGTGTGGTCTACAAGGGTGTTCTACCGGATGGTAACGAAATAGCGGTTAAGAGATTGTCGAAAAAGTCTTGGCAAGGTATAGAAGAATTAAAAAATGAGGTCATTCTAATAGCTAAACTTCAACACAAGAATTTGGTGAGATTGTTGGGATGTGTCTTAGAAGGAGAAGAAAAGATGCTCATATATGAACTCATGTCAAATAGAAGCCTTGATCGATTTATATTCGATCCAAACAAACGTCCAAAACTTGATTGGAACACATGCTATGGCATCATCGGCGGCATAGCAAGAGGACTACTTTATCTACACGAGGAATCTCGGCTTAAAATCATTCATCGCGACCTAAAGCCAAACAATGTGTTGTTAGACCATGAGTTAATAGTAAAAATATCAGATTTTGGTATGGCGAGAATGTTTTCTGAGAATCAGAATACAGCAAACACAAAAAGAGTTGTGGGAACACATGGATATATGGCACCAGAGTATGCAATGGAGGGATTATTCTCAGTGAAATCTGATGTCTTCAGCTTTGGCGTAATTATGCTGGAAATCATCAGTGGAAAAAGAAATAGCGGATTTTACATAACCGGACTTGCCCCGACTCTCCTGGGATATGCTTGGAGGATGTGGAATGAAGGAAAGGGATTAGAAATTGTCGATTCTATATTATCGGAGTCATGTATTGATTCTGAAACGGAAGTTCTTAGGTGCATTCATATTGGGCTCTTGTGTGTGCAGGAAGATCCGCAACACAGGCCCACAATGTCAAATGTTGCGGTTCTCCTAGGAAGTGAATCAATGGTTCTTCCCCAACCAAGACAACCGGCATTTTCTTTAGGTAAGATGATTCGCGTAGATCCTTCTACATCAACAAATCGTTCGGCTAACGAGAGTATATGGTCTAGTATTTCACCACGATGA 2016 0.3839 MDKDKISSAMIMLIILVLKSLNFVSGTDNPIDTYCPDNFPFYTSNTSFHKNLELLMKTLSSNIVASNTSFFNNTSTGEGLEKVYGQALCRGDITNSTVCNECIEKASKDLMNRCKSEDAMIWYELCQVRYSFQMFFTNAVYTGKYPKQNDLEKRVSDPTSFQQVLNYLMNNISNEAAFSPSKNMFATAEIEFSVKKRIYGLAECTKDISETECRSCLSSAITELNQCCSYREGGIIVSRNCNVRFDQFEFFNASSLSASLLIFPTSKEGKWKPWMFILTISGSVLTLTAFIGLCTTCLRKKKDRERDEEKSDRTLLQELSSSKNVVITQEGQLVSSDEKMFMTLATIKAATGEFSDKNRLGQGGFGVVYKGVLPDGNEIAVKRLSKKSWQGIEELKNEVILIAKLQHKNLVRLLGCVLEGEEKMLIYELMSNRSLDRFIFDPNKRPKLDWNTCYGIIGGIARGLLYLHEESRLKIIHRDLKPNNVLLDHELIVKISDFGMARMFSENQNTANTKRVVGTHGYMAPEYAMEGLFSVKSDVFSFGVIMLEIISGKRNSGFYITGLAPTLLGYAWRMWNEGKGLEIVDSILSESCIDSETEVLRCIHIGLLCVQEDPQHRPTMSNVAVLLGSESMVLPQPRQPAFSLGKMIRVDPSTSTNRSANESIWSSISPR* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5170 671 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 670 - -
Psa4g5170 671 Pfam Salt stress response/antifungal 40 132 IPR002902 -
Psa4g5170 671 Pfam Salt stress response/antifungal 156 246 IPR002902 -
Psa4g5170 671 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Psa4g5170 671 Pfam Protein tyrosine and serine/threonine kinase 357 624 IPR001245 GO:0004672|GO:0006468
Psa4g5170 671 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 670 - -
Psa4g5170 671 SMART serkin_6 354 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g5170 671 ProSiteProfiles Gnk2-homologous domain profile. 30 135 IPR002902 -
Psa4g5170 671 ProSiteProfiles Gnk2-homologous domain profile. 143 250 IPR002902 -
Psa4g5170 671 SUPERFAMILY Protein kinase-like (PK-like) 335 625 IPR011009 -
Psa4g5170 671 Gene3D Transferase(Phosphotransferase) domain 1 430 633 - -
Psa4g5170 671 ProSiteProfiles Protein kinase domain profile. 354 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g5170 671 Gene3D - 146 250 IPR038408 -
Psa4g5170 671 Gene3D - 31 135 IPR038408 -
Psa4g5170 671 Gene3D Phosphorylase Kinase; domain 1 315 429 - -
Psa4g5170 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Psa4g5170 671 CDD STKc_IRAK 360 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5170 Psa-Chr4 443968156 443971656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5170 12 647 Receptor kinase-like Gene Family AT4G05200 41.353 1.44e-163 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa4g5170 PK_Tyr_Ser-Thr 6.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5170 - - gmx:102669229 933.71