Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5125 ATGACTAAGAGAACCAAGAAGGCCGGTATCGTTGGCAAATACGGCACCCGATATGGTGCTAGTTTGAGGAAGCAAATTAAGAAGATGGAAGTCAGTCAGCACAGTAAATTTTTCTGCGAGTTTTGTGGAAAGTATGCTGTTAAGAGAAAGGCTGTTGGAATTTGGGGCTGCAAAGATTGTGGAAAGGTCAAGGCTGGTGGTGCTTACACTTTGAATACTGCCAGTGCTGTCACTGTTAGGAGCACCATCCGAAGGTTGAGGGAGCAGACTGAGAGTTAG 279 0.4588 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5125 92 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 4 72 IPR002674 GO:0003735|GO:0005840|GO:0006412
Psa4g5125 92 Gene3D - 1 92 IPR011331 GO:0003735|GO:0005840|GO:0006412
Psa4g5125 92 SUPERFAMILY Zn-binding ribosomal proteins 10 82 IPR011332 GO:0006412
Psa4g5125 92 Pfam Ribosomal L37ae protein family 4 88 IPR002674 GO:0003735|GO:0005840|GO:0006412
Psa4g5125 92 PANTHER ZGC:171772 1 92 - -
Psa4g5125 92 TIGRFAM eL43_euk_arch: ribosomal protein eL43 1 91 IPR002674 GO:0003735|GO:0005840|GO:0006412
Psa4g5125 92 PANTHER 60S RIBOSOMAL PROTEIN L37A-2 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5125 Psa-Chr4 442682400 442684443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5125 1 92 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 93.478 7.82e-60 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5125 K02921 - gmx:100796438 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5125 4 442682400 442684443 Psa4g5125 4 442682400 442684443 ECH