Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5109 ATGAGCTATGAAATGGAAGAATTACAAGAGAATTGGATTCCTCATTTGGAAATGGATGGTGAAAATTTCTTCAATCAACAAAACCATATGAAATATTTGCAGGAACAAATCTCATACCCTTGTTCTACTCTTGTTGAAGCTTCTTATAATAACACCACAAATTATGAAAACCCTCTTAATGTTTTTATGGGAGATAGAACATGTCAATTCAACATGGTTGATATTGCTGCAGAAAATAATATTCTATCAACTCACATTTTGCCTTTGATTAATTCACCAATTGATCCTGCTTTTCAAAGTGCTCAAGTGAATCATGGTTCGAAGCCAATTAAGAGGAAGATTAGAAGCACTTCTGAAACTGCTGAGCATATAGCTTCTGAGAGGAAAAGAAGATTAAAATTGACAAGGAATTTCGTTGCACTTTCTGCTATAATTCCTGGCTTGAAGAAGACAGAAAAGTCTTACATACTTCAAGAAGCAATCAATTATATAAATCAACTTCAAGAACGTGTAAGAGAACTTGAAATTGAAAATGTAAAGATAAATATAGCCTATTCGACAATGGTTGATAAGAAACTACAAAACTCAAAAACTTGTGAAGCAAATGTGGTTGATAATCATAAATTCAGTGATGAATTTGCACTGCCTGAAGTCACAGCAAGAGTCTCAGAGAAAAATGTGATGATTATGATTCAATGTGAGAAGAAGCAAAATGATGATATGGTGCACAAAATATTGAGCTTGGTTACAAATCTTCATCTATCTATAACAAGTTCCCACATTTTTCCATTTGGTGCTTCCACACTTCAAATCACAATTATTGCTCAGATGAAAGACGAGTATAGCTTGACAATCGATGATCTGGTGAAAATCCTAAGGAATGTACTATTGGAGTCAAATGGTGATCAACAATGA 915 0.3355 MSYEMEELQENWIPHLEMDGENFFNQQNHMKYLQEQISYPCSTLVEASYNNTTNYENPLNVFMGDRTCQFNMVDIAAENNILSTHILPLINSPIDPAFQSAQVNHGSKPIKRKIRSTSETAEHIASERKRRLKLTRNFVALSAIIPGLKKTEKSYILQEAINYINQLQERVRELEIENVKINIAYSTMVDKKLQNSKTCEANVVDNHKFSDEFALPEVTARVSEKNVMIMIQCEKKQNDDMVHKILSLVTNLHLSITSSHIFPFGASTLQITIIAQMKDEYSLTIDDLVKILRNVLLESNGDQQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5109 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Psa4g5109 304 Coils Coil 157 184 - -
Psa4g5109 304 PANTHER BHLH TRANSCRIPTION FACTOR 75 299 - -
Psa4g5109 304 Pfam Helix-loop-helix DNA-binding domain 122 168 IPR011598 GO:0046983
Psa4g5109 304 Gene3D - 116 191 IPR036638 GO:0046983
Psa4g5109 304 SMART finulus 124 173 IPR011598 GO:0046983
Psa4g5109 304 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 75 299 - -
Psa4g5109 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 178 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5109 Psa-Chr4 442115831 442122579 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5109 79 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.013 1.39e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g5109 HLH 5.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5109 - - aprc:113850585 189.504