Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5106 ATGGAAGATGTATGGCAAACATGGATTTCTTCTTTGGAAATGGATGGTCACTCGTTGGATGAAGATAGGTTTGATATAGAGAATGTGCAAGAACCAAGTTGTTTCATTTCTCAAGAATATTATGATGCTAATTCACAACAAACACCATCTCAATACCTTATGTCTTTTGAAAACTCATCTATGGAACCTTCTTCTAATAGTGCCATGGCTACATGTTCTTCCATCATGGATCTAAAAACAACAGCATTGAATCACAGTGAGAGTAGTGAGTTACCAAAAGTAATTAAGAAAACAAACAAGAATCGTAGAACTTCATCTGAGATACAAGATCATATCATGGCTGAGAGAAAAAGGAGACAAGTTATTAGTGAGAGGTTCATAGCACTTTCTGCCACCATTCCTGGATTGAAGAAGACAGATAAGATCTACATACTTGAAGAAACTATCAATTATGTGAAACAACTTCAAGAGAAAATAAAAGAGCTGGACAATCAAAACACAATGAAAAATAAAGATTCAGAGATACTCATCAAGAAATCTCAAGCTTGCACAAAAGAGAATGATAATGATGAGCATAAAGATTATTCCAAGAAAGAACTACCTAAGGTTAAAGCAAGAGTGATAAATAAGGAAGTTATGATTGGAATCCATTGTGAGAAACAAAAGAATATTATGGTCAAAATAATGGGCTTGCTTCAAAGTCTTCATCTATCACTTGCTAGTAGTAGCATATTGCCATTTGGAACTTCCACTCTTAAAGTTACAATCATTGCTCAGATGAATGATAAATATTGCATGAACGTGACTGATCTAGTTAAAAATCTGAGGCATGATCTTTCCGAATTACGTGACAACCAGAATAATATTTTTGAGAGGACTACATAG 885 0.3412 MEDVWQTWISSLEMDGHSLDEDRFDIENVQEPSCFISQEYYDANSQQTPSQYLMSFENSSMEPSSNSAMATCSSIMDLKTTALNHSESSELPKVIKKTNKNRRTSSEIQDHIMAERKRRQVISERFIALSATIPGLKKTDKIYILEETINYVKQLQEKIKELDNQNTMKNKDSEILIKKSQACTKENDNDEHKDYSKKELPKVKARVINKEVMIGIHCEKQKNIMVKIMGLLQSLHLSLASSSILPFGTSTLKVTIIAQMNDKYCMNVTDLVKNLRHDLSELRDNQNNIFERTT* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5106 294 Coils Coil 145 172 - -
Psa4g5106 294 PANTHER BHLH TRANSCRIPTION FACTOR 32 282 - -
Psa4g5106 294 Coils Coil 265 292 - -
Psa4g5106 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 155 IPR011598 GO:0046983
Psa4g5106 294 SMART finulus 112 161 IPR011598 GO:0046983
Psa4g5106 294 Pfam Helix-loop-helix DNA-binding domain 110 156 IPR011598 GO:0046983
Psa4g5106 294 Gene3D - 94 172 IPR036638 GO:0046983
Psa4g5106 294 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 32 282 - -
Psa4g5106 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 172 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5106 Psa-Chr4 442010906 442019230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5106 49 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 38.589 3.47e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g5106 HLH 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5106 - - mtr:MTR_8g009020 324.324