Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5102 ATGGATACAGATACAGTTACACCACCGTCACCTTCCCGTTCTTCTTCGTTACAGAATATCAGTCCAAGCATTCTCATTATCGTTACGGTTCTCGCCATCACCGTTATCGTTTCTCTTGCTATCTGTTTCCTTCTCCGCCACCTCAACTGTAACTGTCTCCGTCGTGTCTCCGCCGATCCATATCCGGTAATCATTGTATCGCCTCCCAGCCGGAGAATCTCACCGGAAATACCTCCTTCAGTCATTGACTCCTTGCCTCTGTTCCCCTACTCCTCAATATCTCGCCGATCTTCCACAGTCACCGCCGCTGACTGTGCAGTATGCTTGTCAAAGTTCCGCAACAGCGACCTCCTCCGTTCTCTACCTCTCTGTTGCCACGCGTTCCACGCTGAGTGCATCGACACATGGCTCCGTTCAAATCTCTCGTGTCCGCTCTGTCGCTCTTCCATATTTCCTTCTGATTCCGACCTCGCGAAGATTCTTCCGTCTACGTCCTCCGACAGTTTTCGAATCGAAATAGGAAACGTGAGCCGGCGAGGAACCAATGCCGAATCCGTCGGCGACGCAAGATCATATTCCATTGGATCATTCGAGTATTATGTAGAGGAGATGTCAGAAGTTTCAGTCACACAAGATCACCGGAGAAGTATCTCAGATCAGAAAGATATTCACATTCCGGTACCTGAGAATCCTTCAATGTCACACGAAACGTTAGAAACCGTCGGTGGAAATGCCGGAAGTGGATACTGGTTGAAGGAGTACATGGACAGACTTTCGGCTTCTATATCGTCGAGGACGGCGTCGTTTCGTAGCTCCGGTAGGTTCTTCAGTGGCGGTGGTGGAAGTAGTCGCAGAATTGAGCCGGTTGAATATGACGTGGATGGTAACCGAATTGGTGAAGAGATTACCGAAATGTTTCGCTGGCTTTCGTCAGGGGTATGA 942 0.4968 MDTDTVTPPSPSRSSSLQNISPSILIIVTVLAITVIVSLAICFLLRHLNCNCLRRVSADPYPVIIVSPPSRRISPEIPPSVIDSLPLFPYSSISRRSSTVTAADCAVCLSKFRNSDLLRSLPLCCHAFHAECIDTWLRSNLSCPLCRSSIFPSDSDLAKILPSTSSDSFRIEIGNVSRRGTNAESVGDARSYSIGSFEYYVEEMSEVSVTQDHRRSISDQKDIHIPVPENPSMSHETLETVGGNAGSGYWLKEYMDRLSASISSRTASFRSSGRFFSGGGGSSRRIEPVEYDVDGNRIGEEITEMFRWLSSGV* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5102 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 7 296 - -
Psa4g5102 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 7 296 - -
Psa4g5102 313 SUPERFAMILY RING/U-box 81 153 - -
Psa4g5102 313 Pfam Ring finger domain 104 147 IPR001841 -
Psa4g5102 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 152 IPR013083 -
Psa4g5102 313 CDD RING-H2_PA-TM-RING 104 147 - -
Psa4g5102 313 SMART ring_2 105 146 IPR001841 -
Psa4g5102 313 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5102 Psa-Chr4 441855563 441857554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5102 30 150 C3H Transcription Factor Family AT1G04360 35.714 4.26e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5102 K10663 - gmx:100817751 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5102 4 441855563 441857554 Psa4g5102 4 441855563 441857554 ECH