Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5101 ATGTATACAGTTACACCACCATCACATTACCGTTCTTCTCCGTTACATAAAATCAGTCCCGGCATTCTCATTATCGTTACGGTTGTTGCCATCACAGTTATCGTTTCTCTTGCTATCTATTTCCTTCTCCGTCACCTCCACTGTAACTGTCTCCGCCGTGTCTCCGCCAATCCATATCCGACAATCATTTTATCGCCTCCCAGCCCGAGATTCTCAGTGGGAATACCTCCTTCAGTCATTGACTCCTTGCCTCTGTTCCCGTACTCCTCAATATCTCGCCGATCCTCCGCCGTCACCGCTGCTGACTGTGCAGTATGCTTGTCAAAGTTCCGCAACAGCGACCTCCTCCGTTCTCTTCCTCTCTGTTGCCACACCTTCCACGCTGAATGCATCGACACATGGCTCCGTTCAAATCTCTCGTGTCCGCTCTGCCGCTCTTCCATATTACCTTCTCCTTCCTATTCCGACCTCATGAAGATTTCCTCCGACAGTTTCCGATTTGAAATAGGAAATGTGAGCCGGCGAGAAACCAATCCCGAATCAGTCGGCGACGTAAGGTCACATACCATTGGATCATTCGAGTATTATGTAGAGGAGCCATCAGAAGTAACCGTCGGTGGAAATGTCGGAAGTGGATACTGGATGAGGGCTATATCTTGGCGTCGGTACGTGTCGTAG 678 0.4956 MYTVTPPSHYRSSPLHKISPGILIIVTVVAITVIVSLAIYFLLRHLHCNCLRRVSANPYPTIILSPPSPRFSVGIPPSVIDSLPLFPYSSISRRSSAVTAADCAVCLSKFRNSDLLRSLPLCCHTFHAECIDTWLRSNLSCPLCRSSILPSPSYSDLMKISSDSFRFEIGNVSRRETNPESVGDVRSHTIGSFEYYVEEPSEVTVGGNVGSGYWMRAISWRRYVS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5101 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 205 - -
Psa4g5101 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 6 205 - -
Psa4g5101 225 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Psa4g5101 225 SMART ring_2 103 144 IPR001841 -
Psa4g5101 225 Pfam Ring finger domain 102 145 IPR001841 -
Psa4g5101 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 150 IPR013083 -
Psa4g5101 225 SUPERFAMILY RING/U-box 80 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5101 Psa-Chr4 441818791 441819468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5101 51 151 C3H Transcription Factor Family AT3G18930 47.222 1.63e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5101 K10663 - gmx:100776516 212.616