Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5096 ATGGAAGCACCGGATTACTTTGTCGGTGGATACTACGGTGCCGGAGTCGACCAATTCTCACCGGAGAAACGTCACGGTTACAGTGATCAGAAGCCCTGTGAGCCTTTTGCTATTGATGACCTGCTTGATTTCTCCAATGCTGACGCTATTATGTCTGATGGTTTCTTCGACAGTAATGTCGCCGGAAATTCCACCGACTCTTCCACTCTTACCGCAATTGATAGCTGTAACTCTTCAGGCTCCGCCGGTGATAACCGCTTTGCAGCCACAATTGTTCCCTGTGGTTTCGCCGGTGATGTTCAGCTAACCGGAGAACTCTGTGTTCCGTACGACGAAATGGCGGAATTGGAATGGCTTTCGAATTTCGTGGAAGATTCATACTCCGCGGAGGAAGAATTGAAAACACTGCAACTTCTCTCCGGTGCCGGCGCGGTTAAACCACAGACACCGGAGTCGTCCTCTTCCACCGACACGCTTCCTCCGTTTTCCGCTGATGAAACCTTACGCAACGCTTCATTTCTCCGGCCGGAAACACCTCTCCCTGGGAAAGCACGGAGCAAACGCTCACGCGCGGCTCCAGGAGACTGGTCCACGCGCCTACTTCATCTCCCCGACGCGCCAGTTTCTCAGATGAAGATTATGCCGGTGAAGAAGCGCGAGGATCCGAATGCAGAATGCTCGGGGAGAAAATGTCTGCATTGCGGTACCGACAAGACGCCGCAGTGGCGAACCGGACCGATGGGACCAAAAACGCTATGCAATGCTTGCGGTGTGAGGTTTAAGTCCGGTAGGTTGGTCCCGGAGTATCGACCGGCGGCGAGTCCAACTTTCGTTTCGGCGAAGCATTCGAATTCGCATAGGAAAGTTCTGGAACTGAGGAGACAGAAAGAGATGCAAAGATCACAGCATCAACAAATTCTAACTCACAGTTCAATTTTCGGCGTATCCAACGGTGGAGATGATTTCATCAATTATCATCATCATCATTGTGGGCCAGAGTTTAGGCACGTTATCTAG 1017 0.5152 MEAPDYFVGGYYGAGVDQFSPEKRHGYSDQKPCEPFAIDDLLDFSNADAIMSDGFFDSNVAGNSTDSSTLTAIDSCNSSGSAGDNRFAATIVPCGFAGDVQLTGELCVPYDEMAELEWLSNFVEDSYSAEEELKTLQLLSGAGAVKPQTPESSSSTDTLPPFSADETLRNASFLRPETPLPGKARSKRSRAAPGDWSTRLLHLPDAPVSQMKIMPVKKREDPNAECSGRKCLHCGTDKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSAKHSNSHRKVLELRRQKEMQRSQHQQILTHSSIFGVSNGGDDFINYHHHHCGPEFRHVI* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5096 338 CDD ZnF_GATA 230 277 IPR000679 GO:0006355|GO:0043565
Psa4g5096 338 PANTHER GATA TRANSCRIPTION FACTOR 1 338 - -
Psa4g5096 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 228 288 - -
Psa4g5096 338 PANTHER GATA TRANSCRIPTION FACTOR 9 1 338 - -
Psa4g5096 338 MobiDBLite consensus disorder prediction 167 196 - -
Psa4g5096 338 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Psa4g5096 338 PIRSF Txn_fac_GATA_plant 22 317 IPR016679 GO:0003677|GO:0005634|GO:0045893
Psa4g5096 338 ProSiteProfiles GATA-type zinc finger domain profile. 225 261 IPR000679 GO:0006355|GO:0043565
Psa4g5096 338 SMART GATA_3 225 275 IPR000679 GO:0006355|GO:0043565
Psa4g5096 338 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
Psa4g5096 338 Gene3D - 226 307 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5096 Psa-Chr4 441658622 441660739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5096 34 338 C2C2-Gata Transcription Factor Family AT4G32890 46.372 7.35e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa4g5096 GATA 6.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5096 - - cam:101510199 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5096 4 441658622 441660739 Psa4g5096 4 441658622 441660739 ECH