Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5095 ATGGCAATGTCCTGCAAGGATGGTAACAAGCATTTAATGGATAATGGAAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCTCTCGAGAGGCTTTATCATGACTGCCCTAAACCGAGTTCAATTCGGAGACAGCAGCTTATTCGGGAGTGTCCTATTCTCTCTAATATTGAGCCAAGGCAAATCAAAGTTTGGTTCCAGAATAGAAGGTGTAGAGAGAAACAGAGGAAAGAGTCTTTTAGGTTGCAAGGTGTGAATAGGAAGTTGACTGCCATGAATAAGCTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCATCTGGTGTATGAGAATGGCTATTTTCGTCAAAACACACAAAATGCTACCAAAGACACGAGTTGTGAGTCAGTTGTGACGAGTGGTCAACACAATATGACTAGTCAACATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAATTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCTTGTGGTCTAGTGGGACTTGAACCCACTAGGGTTGCAGAAATCCTCAAAGACCGTCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGACATTGTCAATGTGCTGCCCACTGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCACCTGCGCGAGACTTCTGGTTGTTACGCTACACTTCTGTTGTAGAAGATGGCAGCCTAGTGATATGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCCGCATTTTGTTAGAGCAGACATGCTGCCTAGTGGATACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATTCACATTGTTGATCATATGGACTTAGAGCCATGGAGTGTGCCAGAAGTACTGCGCCCGCTATATGAATCATCAACAGTGCTGGCTCAGAAGACTACTATGGCGGCCTTACGTCATCTAAGGCAGATCTCGCATGAAGTTTCTCAGCCCAATGTCTCTGGGTGGGGTAGACGTCCAGCAGCTCTGCGGGCACTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAAGGGTGGACAATGATGGGCAACGATGGTGTAGATGATGTCACTATTCTAGTGAATTCATCGCCTGAAAAATTAATGGGTCTGAATCTTTCCTTTGGCAATGGATTCCCTTCTGTCAGTAATGCAGTGTTATGTGCCAAGGCATCAATGCTATTACAGAACGTGCCTCCAGCCATTCTCCTAAGGTTCCTGCGAGAACATAGATCAGAATGGGCAGACAATAACATGGATGCTTACACAGCTGCAGCCATTAAAGTTGGCCCTTGTAGCTTAACAGGGTCTCGCATGGGAAATTATGGGGGTCAAGTTATACTCCCGCTAGCTCATACTATTGAGCATGAGGAGTTTTTGGAAGTCATTAAGTTGGACGGGGTTTCCCATTCTCCTGAAGACGCCATGATGCCTAGAGAATTGTTTCTGTTGCAACTATGCAGCGGAATGGATGAGAATGCTATTGGCACCTGTGCAGAACTTATATTTGCTCCAATTGATGCTTCATTTGCTGATGATGCCCCACTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCTAATCGCACTCTTGACCTTGCATCTGCCCTTGACATTGGCCCCACTGGAAACCGAGCTTCAAGTGATAATGCTGGAAATTCTGGTTGTGTGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCACATGCAAGAGAATGTAGCATGCATGGCACGTCAATATGTTCGCAGTATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCATCTCATCTGAGTTCACATGCTGGGCTGAGGTCACCATTAGGAACTCCTGAGGCGCAAACCCTTGCTCATTGGATCTGCAACAGTTATCGATGCTACTTGGGTGTGGAGCTGCTTAAATCTAATAACGAAGGAAAAGAATCTATACTCAAGTCCTTGTGGCATCACTCAGATGCTGTATTATGCTGCACTTTAAAGGCAATGCCAGTGTTCACTTTCTCAAACCAGGCAGGGCTTGACATGCTGGAGACTACCCTAGTTGCATTACAAGATATAACTTTAGAGAAAATATTCGATGATCATGGTCGAAAAGCACTCTTTTCAGAGTTTCCCCAGATTATTCAACAGGGTTTTGCATGTCTGCAAGGTGGTATTTGTCTCTCAAGCATGGGGCGACCTGTCTCATACGAGAGAGTTGTTGCCTGGAAGGTGCTTAATGATGAACAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2508 0.453 MAMSCKDGNKHLMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPRQIKVWFQNRRCREKQRKESFRLQGVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQNTQNATKDTSCESVVTSGQHNMTSQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDIVNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVVEDGSLVICERSLKNTQNGPSMPPVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQPNVSGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTMMGNDGVDDVTILVNSSPEKLMGLNLSFGNGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLTGSRMGNYGGQVILPLAHTIEHEEFLEVIKLDGVSHSPEDAMMPRELFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDIGPTGNRASSDNAGNSGCVRSVMTIAFEFAFESHMQENVACMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGKESILKSLWHHSDAVLCCTLKAMPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKALFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNDEQNAHCICFMFVNWSFV* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5095 835 CDD START_ArGLABRA2_like 152 367 - -
Psa4g5095 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 835 IPR044830 GO:0003700
Psa4g5095 835 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Psa4g5095 835 Pfam START domain 158 366 IPR002913 GO:0008289
Psa4g5095 835 SMART HOX_1 14 80 IPR001356 GO:0003677
Psa4g5095 835 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 835 - -
Psa4g5095 835 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Psa4g5095 835 SUPERFAMILY Bet v1-like 157 367 - -
Psa4g5095 835 Gene3D - 192 370 IPR023393 -
Psa4g5095 835 Gene3D - 10 81 - -
Psa4g5095 835 SMART START_1 157 367 IPR002913 GO:0008289
Psa4g5095 835 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Psa4g5095 835 ProSiteProfiles START domain profile. 148 362 IPR002913 GO:0008289
Psa4g5095 835 CDD bZIP 69 108 - -
Psa4g5095 835 CDD homeodomain 17 77 IPR001356 GO:0003677
Psa4g5095 835 Coils Coil 86 106 - -
Psa4g5095 835 Pfam MEKHLA domain 692 834 IPR013978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5095 Psa-Chr4 441501402 441508600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5095 1 787 Homeobox Transcription Factor Family AT1G52150 83.586 0.0 1383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa4g5095 START 1.3e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5095 K09338 - gmx:100800165 1576.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5095 4 441501402 441508600 Psa4g5095 4 441501402 441508600 ECH
Psa5g6827 5 564078041 564085593 Psa4g5095 4 441501402 441508600 PCT