Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5090 ATGCCGGTAGTGCGAAGTGGAGCGCGCCGGGGTCGGCCACCGAAGCGACAACGACAACCTCAGGGGGAACAGCAACAAAGTCCGATTGAAGAGGAGGCGATTGCAAATAGGACGAGACGGCGGAGTGCAGCTGCAGCGGCTGTGAACGCTAAGGTTGAAGAGCAGGTAGCTGCGGTAAATGTGAACGTAGTTGTTGCTGCGGTGGTGAAGGAAGGGAAAGCAATAGAGGAGAAGGCGATGGATGAATGTGATAACGGAGGTCACAGTAATGGCAAGGCTGAAGCTGGTGAAGAGGACAGTAACGCCTTGGTTATTCCTGAACAGGTTCAAGTAGGCAATTCTCCTTTGTATAAAACCGAGAAAAAACTTGGCAAGGGTGGATTTGGTCAAGTATATTTTGGTCGGCGTGTTTCTGGTGGAAATTTGAGCGAGAGAACTGGACCTGGAGCTGTAGAGGTAGCAATAAAATTTGAGCATACAAGTAGTAAAGGATGTAACAGTGGACCACCGAATGAGTGGCAAGTATACAACACCCTCGGTGGAAGTCATGGTGTGCCACAGGTATATTACAAGGGCAAGCAAGGAGACTATTTTATCATGATTATGGATATTCTAGGACCTAGCTTGTGGGATGTTTGGAATAATTACTCTCACACCCTGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAATATCCATATTGGAGAAGATGCACTCTCGAGGGTATGTGCACGGAGATGTGAAGCCGGAGAATTTTCTGCTTGGCGCTTCTGGGACACCTGACGAGAAAAAACTATTCCTAGTAGATCTTGGATTAGCTACTAAATGGCGGGATAGTACATCTGGTTTGCATGTGAACTATGACCAAAGGCCCGATGTTTTCAGGGGCACTGTCCGCTATGCAAGTGTGCACGCACATTTGGGGAGAACTGGAAGCAGGAGGGATGATTTGGAATCTCTTGCATATACACTAATATTTCTTCTTCGAGGCCGTCTTCCTTGGCAGGGTTTCCAGGGAGAAAACAAAGGATATCAGGTTTGCAGGAAGAAGATGGGAACGTCTCCAGAAACCCTCTGTTGTTTTTGTCCCCAGCCTTTTAAAGAGTTTATTGAACATGTAGTGAGCTTAAAGTTTGATGAAGAGCCTAATTATGCAAAATACATTTCTTTCTTTGATGGGATTGTTGGTCCAAACCCAGATATTAGGCCACTTAATACAGAAGGTGCTCAAAAGCTTGTTGGTCATAAAAGAGGCCGGTTGGCTTCAGACAATGATGATGAACAACCCAAAAAGAAGGTTCGAATGGGTTTGCCAGCAAACCAGTGGATTAGTGTTTACAATGCTCGTAGACCGATGAAACAAAGATATCACTACAATGTGTCGAGTACAAGGCTAACCCAGCATATTGAGAAAGGAAATGAGGATGGCTTATATATTAGCAGTGTTTCTTCATCTCAGGGCCTATGGGCCTTAATCATGGACGCAGGGACAGGTTTCACTTCCCAAGTTTATAAACTCTCCCCCCAATTTTTGCACAAGGAATGGATCATGGAGCAGTGGGAAAAAAATTATTATATCAGTGCAGTTGCAGGAGTTGTAAATGGGAGTTCACTTGTAGTAATGTCTAAAGGCACCCAGTATTTGCAGCAATCATACAAAGTCAGTGATTCATTTCCTTTCAAATGGATTAACAAAAAGTGGAAGGAGGGCTTTTATGTAACTTCAATGGCCACCGCAGGGGCCAGATGGGGAGTAGTTATGTCTCGTGGGGCAGGGTTTACAGAGCAGGTGGTCGAACTAGACTTTCTGTATCCTAGTGAAGGGATTCACAAGCGGTGGGAAGCTGGTTACCGAATCACATCGCTTGCTGCAACTTGGGACCAAGCTGCTTTTGTTCTGAGTGTTCCTAGTAAAAAGCCCCAGGACGAAACTCAGGAAACACTAAGGACTACTGCTTTTCCTAGTACCCATGTTAAGGATAAGTGGGACAAGAACCTCTACATTGCCTCTATTTGCTATGGACGCACCGTTTCTTGA 2043 0.4542 MPVVRSGARRGRPPKRQRQPQGEQQQSPIEEEAIANRTRRRSAAAAAVNAKVEEQVAAVNVNVVVAAVVKEGKAIEEKAMDECDNGGHSNGKAEAGEEDSNALVIPEQVQVGNSPLYKTEKKLGKGGFGQVYFGRRVSGGNLSERTGPGAVEVAIKFEHTSSKGCNSGPPNEWQVYNTLGGSHGVPQVYYKGKQGDYFIMIMDILGPSLWDVWNNYSHTLSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGASGTPDEKKLFLVDLGLATKWRDSTSGLHVNYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGFQGENKGYQVCRKKMGTSPETLCCFCPQPFKEFIEHVVSLKFDEEPNYAKYISFFDGIVGPNPDIRPLNTEGAQKLVGHKRGRLASDNDDEQPKKKVRMGLPANQWISVYNARRPMKQRYHYNVSSTRLTQHIEKGNEDGLYISSVSSSQGLWALIMDAGTGFTSQVYKLSPQFLHKEWIMEQWEKNYYISAVAGVVNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWKEGFYVTSMATAGARWGVVMSRGAGFTEQVVELDFLYPSEGIHKRWEAGYRITSLAATWDQAAFVLSVPSKKPQDETQETLRTTAFPSTHVKDKWDKNLYIASICYGRTVS* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5090 680 MobiDBLite consensus disorder prediction 79 99 - -
Psa4g5090 680 MobiDBLite consensus disorder prediction 1 37 - -
Psa4g5090 680 MobiDBLite consensus disorder prediction 79 95 - -
Psa4g5090 680 Pfam Protein kinase domain 117 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g5090 680 CDD STKc_CK1 117 393 - -
Psa4g5090 680 ProSitePatterns Protein kinases ATP-binding region signature. 123 156 IPR017441 GO:0005524
Psa4g5090 680 SMART serkin_6 117 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g5090 680 SUPERFAMILY Protein kinase-like (PK-like) 117 397 IPR011009 -
Psa4g5090 680 MobiDBLite consensus disorder prediction 18 32 - -
Psa4g5090 680 Gene3D Transferase(Phosphotransferase) domain 1 83 436 - -
Psa4g5090 680 PANTHER CASEIN KINASE 1-LIKE PROTEIN HD16 ISOFORM X1 87 654 - -
Psa4g5090 680 ProSiteProfiles Protein kinase domain profile. 117 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g5090 680 PANTHER CASEIN KINASE-RELATED 87 654 - -
Psa4g5090 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5090 Psa-Chr4 441141205 441147383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5090 117 342 AGC Kinase Gene Family AT3G08730 25.000 3.11e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Psa4g5090 Pkinase 5.3e-18 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5090 4 441141205 441147383 Psa5g6809 5 563521032 563528424 ECH
Psa4g5090 4 441141205 441147383 Psa4g5090 4 441141205 441147383 ECH