Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5054 ATGATGCCTAAGAAATATGAAGGGCATGCCGTGGGAATAGACCTTGGCACAGCTTATTCTTGTGTTGCAGTGTGGCATGATGTACACGCTAGAGTTGAGATTATTCACAATGACCAAGGCAACAGAACCACACCTTCTTGTGTTGCTTTCACTCACAAACAAAGATTGATTGGTGAAGCAGCTAAGGATCAAGCTGCTACAAACCCACAAAACACTATCTTTGATGCTAAGAGGTTAATAGGTAGGAAATTCAGTGATGATGTTGTTCAAAAAGACATCAACATGTGGCCATTCAAAGTCGTTGCTGATGCAAACAACAAACCCATGGTAGTTGTTGATTACAAGGGTCAGGAGAAGCACCTCTGTGCTGAGGAAATTTCATCAATGGTCCTCACAAAGATGCGTCAGATTGCAGAAGCATATTTGGAATCACCGGTTAAGAATGCAGTCATTACTGTGCCAGCTTATTTCAATGATTCTCAACGAAAATCCACCATTGATGCTGGTGCCATTGCTGGCCTTGATGTTATGCGGATAATTGCCGAGCCTACTGCTGCTGCTATTGCATATGGCCTTGACAAGAAAACTGCTTGTGTGGGAGAACGCAATATTTTTGTATTTGACCTTGGTGGTGGAACTTTTGACGTGTCTCTTGTAACAATCAAGGATAAGGTCTTCCAAGTTAAGGCTACCGCTGGAAACTCCCACCTTGGTGGTGAGGACTTTGATAATAGAATGGTGAACTACTTTTTAGAGGAGTTCAATAGGAAGAACAAAGTGGACATTAGTAGAAACCCAAGAGCCTTAAGGAGGTTGAGATCTAAATGCGAGAGGGCGAAAAAGTTACTCTCTTTTTCTTTTGACACCACTATTGAGGTAGATGCATTATTTGAGGGCATCGACTTCTTTTCATCAATTTCTCGTGCTAAGTTTGAGGAAATCAATATGGACCTTTTTAATGAATGTATGGAGACAGTTGAGAGTTGTCTTACTGACTCTAAGATGGACAAGAGTTGTATAGATGATGTTGTCCTTGTTGGTGGCTCTTCTAGGATTCCCAAACTGCAGCAGTTATTAGGGGACTTTTTCAATGGAAAGGATTTGTGCAATAGCATCAATCCTGATGAGGCTGTTGCTTTTGGTGCAGCTGTGCAGGCTGCGTTGCTAAGTGATGGCATTAAGAATGTTCCAAGTTTGGTATTGATCGATGTTACACCATTGTCTTTAGGTTTTAGAAAGCCTCATGATAGAATGAGAGTAGTGATTCCTAAGAATACTATTATACCTGTCAAGAAGGCAATAATGTGTAAAACGGTTATAGATAACCAAACTTTAGTTATGGTAGGGGTTTATGAGGGTGAGAGAACGAGAGCTAGTGACAACAATGTTCTTGGTTCTTTTACACTGTCTGGGATTCCAACTGCCCCACGTGGCCATCCTATAAGTGTAAACTTTTCTATTGATGAGAACGGTATTTTGGCAGTTTGTGCTAAGGAAGCATCCACGGGCATCATGAATGAGATTGTGATAACAGATTATAAAGAGAGGTTATCTGCAGAAGAAATTCAAAAATTGATTCGAGAAGCTGATATTTATAGTGCTGAAGATAAGAAATTCCAAGAAATGGCCGAAGCTAAAAGTAAATTGGAAAACTGTGTTTACAAACTTGAAACCGTTTTAAAGAAGCAGGAGGTTAAATTGAAGCTCTCAAAACTGAAGAACATACAAATCAATGCTGCAATCAAAAGGGCCAAAATATTGCTCGATGACAATCACATGCACGAAATAGATGTTCTTAAGAATCATATGAACAAGCTAGATAGTATGTATCTTGACATTATACTATAG 1848 0.3977 MMPKKYEGHAVGIDLGTAYSCVAVWHDVHARVEIIHNDQGNRTTPSCVAFTHKQRLIGEAAKDQAATNPQNTIFDAKRLIGRKFSDDVVQKDINMWPFKVVADANNKPMVVVDYKGQEKHLCAEEISSMVLTKMRQIAEAYLESPVKNAVITVPAYFNDSQRKSTIDAGAIAGLDVMRIIAEPTAAAIAYGLDKKTACVGERNIFVFDLGGGTFDVSLVTIKDKVFQVKATAGNSHLGGEDFDNRMVNYFLEEFNRKNKVDISRNPRALRRLRSKCERAKKLLSFSFDTTIEVDALFEGIDFFSSISRAKFEEINMDLFNECMETVESCLTDSKMDKSCIDDVVLVGGSSRIPKLQQLLGDFFNGKDLCNSINPDEAVAFGAAVQAALLSDGIKNVPSLVLIDVTPLSLGFRKPHDRMRVVIPKNTIIPVKKAIMCKTVIDNQTLVMVGVYEGERTRASDNNVLGSFTLSGIPTAPRGHPISVNFSIDENGILAVCAKEASTGIMNEIVITDYKERLSAEEIQKLIREADIYSAEDKKFQEMAEAKSKLENCVYKLETVLKKQEVKLKLSKLKNIQINAAIKRAKILLDDNHMHEIDVLKNHMNKLDSMYLDIIL* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5054 615 Gene3D - 195 369 - -
Psa4g5054 615 PRINTS 70kDa heat shock protein signature 9 22 - -
Psa4g5054 615 PRINTS 70kDa heat shock protein signature 39 51 - -
Psa4g5054 615 PRINTS 70kDa heat shock protein signature 61 69 - -
Psa4g5054 615 PRINTS 70kDa heat shock protein signature 149 169 - -
Psa4g5054 615 PRINTS 70kDa heat shock protein signature 212 222 - -
Psa4g5054 615 PRINTS 70kDa heat shock protein signature 340 356 - -
Psa4g5054 615 PRINTS 70kDa heat shock protein signature 372 392 - -
Psa4g5054 615 PRINTS 70kDa heat shock protein signature 398 417 - -
Psa4g5054 615 PRINTS 70kDa heat shock protein signature 478 494 - -
Psa4g5054 615 Gene3D - 74 129 - -
Psa4g5054 615 Gene3D Actin; Chain A, domain 4 238 321 - -
Psa4g5054 615 Gene3D - 11 387 - -
Psa4g5054 615 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 614 IPR029048 -
Psa4g5054 615 ProSitePatterns Heat shock hsp70 proteins family signature 2. 206 219 IPR018181 -
Psa4g5054 615 PANTHER HEAT SHOCK PROTEIN 70KDA 5 610 IPR013126 GO:0005524|GO:0140662
Psa4g5054 615 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 389 570 IPR029047 -
Psa4g5054 615 Pfam Hsp70 protein 10 610 IPR013126 GO:0005524|GO:0140662
Psa4g5054 615 PANTHER HEAT SHOCK 70 KDA PROTEIN 5 610 - -
Psa4g5054 615 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 550 IPR029047 -
Psa4g5054 615 ProSitePatterns Heat shock hsp70 proteins family signature 3. 343 357 IPR018181 -
Psa4g5054 615 SUPERFAMILY Actin-like ATPase domain 201 390 IPR043129 -
Psa4g5054 615 SUPERFAMILY Actin-like ATPase domain 9 194 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5054 Psa-Chr4 439601040 439603760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5054 2 614 Calmodulin-binding Proteins AT3G12580 62.602 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5054 K03283 - gmx:102667578 853.203