Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g5048 | ATGGCTAATGAAGGAAACAAAAGCAATGATTTTTATGCGGTTTTGGGATTGAATAAAGAATGCACTGATTCAGAGCTAAGGAATGCTTATAAGAAACTTGCAATGAAATGGCACCCAGATCGTTGTTCAGCTTCAGGAAATGTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTTCAGGCGATTCAAGAGGCCTATTCTGTTTTATCTGACGCAAATAAGAGGTTAATGTATGACGTTGGAGTTTACGACAATGATGATGATGAAAATGGTATGGGTGATTTTTTGAACGAAATGGTTACAATGATGAGCCAAACTACTTCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAGCAGTTGTTTAGTGATATGTTTCAAGCAGATATTGGATTGGATGGAAGCAATTCTATGAATGCTTCCACTTCATCTACTTTCATGACTTATAATGAAAGTTCTAATTCTAATAAACGCAATTCCAACCAGATGAACTATGGAATGGCGGGCGATTCGTCTAGCTTCGACGCTAATTATCAGAACTTCTGTTTTGGGGTTAATCTTGTAAATTATCATTACCAATGA | 582 | 0.3677 | MANEGNKSNDFYAVLGLNKECTDSELRNAYKKLAMKWHPDRCSASGNVKFVEEAKKKFQAIQEAYSVLSDANKRLMYDVGVYDNDDDENGMGDFLNEMVTMMSQTTSNENGEESFEELQQLFSDMFQADIGLDGSNSMNASTSSTFMTYNESSNSNKRNSNQMNYGMAGDSSSFDANYQNFCFGVNLVNYHYQ* | 194 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g5048 | 193 | Pfam | DnaJ domain | 10 | 78 | IPR001623 | - | |
| Psa4g5048 | 193 | SUPERFAMILY | Chaperone J-domain | 7 | 93 | IPR036869 | - | |
| Psa4g5048 | 193 | ProSiteProfiles | dnaJ domain profile. | 10 | 81 | IPR001623 | - | |
| Psa4g5048 | 193 | PANTHER | CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN | 1 | 186 | - | - | |
| Psa4g5048 | 193 | CDD | DnaJ | 10 | 70 | IPR001623 | - | |
| Psa4g5048 | 193 | Gene3D | DnaJ domain | 9 | 67 | IPR036869 | - | |
| Psa4g5048 | 193 | PANTHER | PUTATIVE, EXPRESSED-RELATED | 1 | 186 | - | - | |
| Psa4g5048 | 193 | SMART | dnaj_3 | 9 | 73 | IPR001623 | - | |
| Psa4g5048 | 193 | ProSitePatterns | Nt-dnaJ domain signature. | 58 | 77 | IPR018253 | - | |
| Psa4g5048 | 193 | PRINTS | DnaJ domain signature | 12 | 30 | IPR001623 | - | |
| Psa4g5048 | 193 | PRINTS | DnaJ domain signature | 30 | 45 | IPR001623 | - | |
| Psa4g5048 | 193 | PRINTS | DnaJ domain signature | 53 | 73 | IPR001623 | - | |
| Psa4g5048 | 193 | PRINTS | DnaJ domain signature | 73 | 92 | IPR001623 | - | |
| Psa4g5048 | 193 | Gene3D | - | 68 | 164 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa4g5048 | Psa-Chr4 | 439359129 | 439362224 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g5048 | 12 | 78 | C2H2 Transcription Factor Family | AT1G74250 | 40.299 | 4.60e-11 | 59.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa4g5048 | - | - | lja:Lj3g3v2576120.1 | 310.071 |