Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5027 ATGGAATTATCACTAGGTAACAACAACAGCATCAACAAAGATCCTAGTTCTTCAAATGCAAACATCATAAACAACCAACATCAACAGCAACAGCAGCAACAGCAACAACCTAGTACTCATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGAAAACTCAACCGTTTAGTGATACCAAAACAGCACGCCGAAAAGTATTTCCCTCTCGATTCGACATCGAACGAGAAAGGTCTTCTTCTCAATTTCGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGCCAAAGCTATGTTATGACAAAAGGTTGGAGCCGTTTTGTCAAGGAGAAAAAACTCGATGCCGGAGACATTGTTTCGTTTCAACGAGGTGTTGGCGATTTGTTTCGACATCGATTGTTTATAGATTGGAGGAGAAGATCTAATCATAACCATAATATGGATCCTTCAACAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGAGGTGCTAATAGTAGATTCTACTCACTTCCTTATCCTTCACCACAAACACAAAGGTTACAACAACAACAACAACAACAGAATCTTCATGACCCTTTACAGAATCAAATGAATTACAATTACCAAATGTATCCATTTCATCAACATGGTGTTGGAAATGTGAATCAGAATTACAATTTTCATCATCATGATCCAAGTTCTGTCTTTTACATGAGATCATCATTACCGGCACCCGCGCCGTCCATGGTTGATCAAGGAAGCTTAACAAGACAACAAGGAGGAGCCGGAGGAGACATTGTTTCAAACATGATTATTGATTCTGTTCCTGTTTCTCATCATTATCATCAACAAGGTGGTAAGAGTGGTTTTTCTAGCACTGGAAATTTTACTAGTACTACTACTATACCTAGTAGTAGCAATAGTATTAATGGTGCTGCAAAAAGGTTAAGGTTGTTTGGTGTGAACATGGAATGTGGATCTTCAACAACTGATGAAAATTTGGCTAATTCACTCCCTTCTTCTTCTTCAAATTTGAGGTTACCTCATGAAGAAACACTTTCAACATCAACAAGATTCCAAGAGGAGAAGAGAAGAGAAGCTTCATTGATTTTCGGTTTAGACCCTTCCTTGCAATATCATAATTTCCATCAACAATGA 1194 0.3735 MELSLGNNNSINKDPSSSNANIINNQHQQQQQQQQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGDLFRHRLFIDWRRRSNHNHNMDPSTTLFTPFFLPNQQQYSIRWGGANSRFYSLPYPSPQTQRLQQQQQQQNLHDPLQNQMNYNYQMYPFHQHGVGNVNQNYNFHHHDPSSVFYMRSSLPAPAPSMVDQGSLTRQQGGAGGDIVSNMIIDSVPVSHHYHQQGGKSGFSSTGNFTSTTTIPSSSNSINGAAKRLRLFGVNMECGSSTTDENLANSLPSSSSNLRLPHEETLSTSTRFQEEKRREASLIFGLDPSLQYHNFHQQ* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5027 397 Pfam B3 DNA binding domain 46 150 IPR003340 GO:0003677
Psa4g5027 397 MobiDBLite consensus disorder prediction 342 366 - -
Psa4g5027 397 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 16 366 - -
Psa4g5027 397 Gene3D - 39 159 IPR015300 -
Psa4g5027 397 SMART B3_2 46 151 IPR003340 GO:0003677
Psa4g5027 397 CDD B3_DNA 44 133 IPR003340 GO:0003677
Psa4g5027 397 ProSiteProfiles B3 DNA-binding domain profile. 46 151 IPR003340 GO:0003677
Psa4g5027 397 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 16 366 IPR044800 GO:0003700
Psa4g5027 397 SUPERFAMILY DNA-binding pseudobarrel domain 42 150 IPR015300 -
Psa4g5027 397 MobiDBLite consensus disorder prediction 342 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5027 Psa-Chr4 437553922 437558491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5027 32 340 RAV Transcription Factor Family AT2G46870 45.806 3.07e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa4g5027 B3 2.1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5027 - - mtr:MTR_8g023990 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5027 4 437553922 437558491 Psa4g5027 4 437553922 437558491 ECH