Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5018 ATGAATACTTTTGTTACTATTATCATTTTGGAACTTTTTTTGTTTTTGTTGTTCATCCCTTTTACTTCTTCTCAGAAACAACTACAAACAAAACTAGTTCAACCACCTTTGCTTCCAAATTCCTGTAACGAAACATGTGGAAAACATCGTGTTCCATTTCCGTTCTATCTCAACAACACTTCATGTGTATCATCATTATCAACTTCTTTTCACCTCACTTGCACAAACTCATCCACCCTTTTCATCAAACTAGCTTCACAGAACTATCCCATTTTGGAATTCTTCTCGGACGGTTTGTTAGTAGACTTTCCCGGCGCGTCGTCGTGTCGCCAATACAACGACTTGAATTCGTTCGGCGAGAGGTTTTTCGACGGAAAGAACTATTTCGGTGTATCGGTGGACAACATTGTTGGTCTCTATGATTGCGAAGATTCTTCGCTTTGTAAAGCGGATTGTGAAACGGTTAATCTTCCTGGTTGTGATGGAAGTGCTGGTGGTGATTCTCTTGGATGTTGTTATCCACTTTCTGATCATAGTATATGGCATGTTGGTGAAGGTTTTTCGGTTTTTTCGAAGTTTGGATGCAGAGGGTTTTCTAGTTGGGCTGTTTTAAGAGGCTCTTATGCAGGGAAAAGAGGGGTGAAATTGGAATTTGCTATTCCTAGGAACTTTTCTAAGGAGATTTGTGCTAAGAATGCAGATATTGTGAATTCTACATCGGTTAACGATGGTGTAAGGTGTGTTTGTCAAGATGGATATGTTGGTGATGGTTTTGCTAATGGGACAGGATGTTTACTATCATGTATCAAAGATGGAAAGGAAGCATATGGAAGTGACTGCTACATCAAAAGGCATGATCAAAGAAAAATGGTCATCATTGCTGGAATCCTTTGTCCAGTTCTTATTGTAGCCTCCTTAGCCACACTATTTTATCTTCTAAGACGAAAAGAAAAGCCGGGAATGTTCGACTCCGAGCAAGCCTATTACCACAACATTTCGTTCCGAAAAGCGTGTAGAACTCGACTATTCAGCCACCATGAACTAGAGCAAGCCACCAATGGTTTCGAAGAGAACAAAAAACTCATGCAATGCAATAACACCGCAATGTTTTCTGGCGTTCTTGGCGATGGATCGCATGTAGCTATACACAAATTATCAAAATGTGAGAATGAAAATGACATGTTGCAAGTCATGTCACAAATCGAAGTCCTATCTTCGATTCTACATAGAAACGTTGCGTCGATTCTTGGTTGTTGCGTTGATTCTAACTACGCTCCTCTAGTGATTTATGAGTATCCTGCAAATGGTACCTTAGAGGATCATTTGCACCAGAAGTTCGAAAACAAAGGACAAAAACTCGGTTTAGATTGGTATAGAAGATTGAATATTGCAACAGAAATAGCTAGTACTATTGCATTGTTACAATATGATAAATCTCCTCCAATATTTCATCATAACCTAAAGTCAAGTTGCATATTCCTCGACGATGATTTATCGGTCAAGATTGCAGGATTCGGACTAGTTAACTACGATTACACGAATTGCGAAAATCGCGTATGCAAAAACGATGTATATGACATAGGTGTGATGCTACTTGAGATTATCTATGGATCAAACCAATTGGACTCACCTACATTAGCATTGAAGAAAATTAGGGACGGGAAGATCGAAGAAATTGTTGATCCGGTTCTTGATTATCACGAGCAACCGCATTATTGTCAAGAACAGATTCAGATCATTGCTGATCTTGCAACAAGATGTTTGCTGTTTGGGGCAGATGGAAAGATGGGAATGGTTGATGTTGCTAGGGAATTGGTTCATTTGAATAAAGAGAGTGTTGATGGTGGAAATGTGAAACTTGTGCTTGAAGAAACATTCTCGAATTCGAGTCTTCTTCAAATGATATCTATGTCTCCTGATTCAATGAATGTTCCTTGA 1938 0.3911 MNTFVTIIILELFLFLLFIPFTSSQKQLQTKLVQPPLLPNSCNETCGKHRVPFPFYLNNTSCVSSLSTSFHLTCTNSSTLFIKLASQNYPILEFFSDGLLVDFPGASSCRQYNDLNSFGERFFDGKNYFGVSVDNIVGLYDCEDSSLCKADCETVNLPGCDGSAGGDSLGCCYPLSDHSIWHVGEGFSVFSKFGCRGFSSWAVLRGSYAGKRGVKLEFAIPRNFSKEICAKNADIVNSTSVNDGVRCVCQDGYVGDGFANGTGCLLSCIKDGKEAYGSDCYIKRHDQRKMVIIAGILCPVLIVASLATLFYLLRRKEKPGMFDSEQAYYHNISFRKACRTRLFSHHELEQATNGFEENKKLMQCNNTAMFSGVLGDGSHVAIHKLSKCENENDMLQVMSQIEVLSSILHRNVASILGCCVDSNYAPLVIYEYPANGTLEDHLHQKFENKGQKLGLDWYRRLNIATEIASTIALLQYDKSPPIFHHNLKSSCIFLDDDLSVKIAGFGLVNYDYTNCENRVCKNDVYDIGVMLLEIIYGSNQLDSPTLALKKIRDGKIEEIVDPVLDYHEQPHYCQEQIQIIADLATRCLLFGADGKMGMVDVARELVHLNKESVDGGNVKLVLEETFSNSSLLQMISMSPDSMNVP* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5018 645 Gene3D Transferase(Phosphotransferase) domain 1 434 515 - -
Psa4g5018 645 Gene3D Transferase(Phosphotransferase) domain 1 516 621 - -
Psa4g5018 645 ProSiteProfiles Protein kinase domain profile. 355 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g5018 645 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 51 640 IPR045274 GO:0007166
Psa4g5018 645 PANTHER OS10G0351500 PROTEIN 51 640 - -
Psa4g5018 645 Pfam Wall-associated receptor kinase galacturonan-binding 42 94 IPR025287 GO:0030247
Psa4g5018 645 Pfam Protein tyrosine and serine/threonine kinase 360 525 IPR001245 GO:0004672|GO:0006468
Psa4g5018 645 Gene3D Phosphorylase Kinase; domain 1 327 432 - -
Psa4g5018 645 SUPERFAMILY Protein kinase-like (PK-like) 338 605 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5018 Psa-Chr4 437000672 437003356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5018 10 608 Receptor kinase-like Gene Family AT2G23450 27.871 4.22e-52 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-3 Psa4g5018 PK_Tyr_Ser-Thr 8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5018 - - gmx:100810557 891.338