Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5010 ATGTCTCAACAAAGACAACCTCATATGATGAGTGGTAACAACCAAGATCAATATAGTGACACAACATTTACCAAAATTTTTGTTGGTGGGTTGGCTTGGGAGACTCAAAGGGACACAATGAGAAGGTATTTTGAGCAATTTGGAGAGATCTTAGAAGCTGTTGTTATCACAGATAAGTATACTGGGAGATCTAAAGGTTATGGTTTTGTGACATTTAAGGATCCTGAGGCAGCTATAAGAGCTTGTCAGAATCCATCTCCAGTTATTGATGGAAGAAGAGCAAATTGCAATATTGCTTCTCTTGGTGCTAACAAGAATAGATCAGTAACTCTTCAACATGGTAGGTTTAGGCCTTCACATGGAGTGGTGGCACCAGCTCCTTATCATGGATCTTCTTCATCCACAATTTTTCATCAACCTACTAGGCAGTACACATTTCCTTATTCAACATTTGGATATTCTGGATATTCACAAGACACTCTGTATCCTGCGCAGAATTATTACAATGTGTATGGTGTTCAACAATATTCACCTTACTACCCATCTGTTGGAGGTGCTGGGACAATGGGGTTGGTCCAAAATATGTACCCTTACTACGGACAATATGCGCAAAATATCCATGGACCTGGTTTTGGTGTTCAATACCCTCAAATGACACAGATTCCAGTTTTGTCTCAGAATTATGGTTCCTCTGGAATATTGTCATTTCCTTCCTCAACAACATTGCCAACCATTAGTCCAGCTAACGTAGCCGCAGCCGCAATCGCAACTACTACAACAGCAACAACTGTGGCAGTAACAGGGGTTACCAGTTCACAAGCTACTGAAACAACAACAGACTCCGAACAAAAACAACAACATTCAACAACTTGA 873 0.4055 MSQQRQPHMMSGNNQDQYSDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSVTLQHGRFRPSHGVVAPAPYHGSSSSTIFHQPTRQYTFPYSTFGYSGYSQDTLYPAQNYYNVYGVQQYSPYYPSVGGAGTMGLVQNMYPYYGQYAQNIHGPGFGVQYPQMTQIPVLSQNYGSSGILSFPSSTTLPTISPANVAAAAIATTTTATTVAVTGVTSSQATETTTDSEQKQQHSTT* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5010 290 MobiDBLite consensus disorder prediction 269 290 - -
Psa4g5010 290 PANTHER BOULE-RELATED 1 273 IPR037366 GO:0003729
Psa4g5010 290 SMART rrm1_1 25 97 IPR000504 GO:0003723
Psa4g5010 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 116 IPR000504 GO:0003723
Psa4g5010 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Psa4g5010 290 Gene3D - 1 114 IPR012677 -
Psa4g5010 290 SUPERFAMILY RNA-binding domain, RBD 5 114 IPR035979 GO:0003676
Psa4g5010 290 CDD RRM_RBM24_RBM38_like 24 99 - -
Psa4g5010 290 PANTHER - 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5010 Psa-Chr4 436097315 436101886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5010 20 100 C2H2 Transcription Factor Family AT2G19380 43.210 3.33e-15 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5010 4 436097315 436101886 Psa4g5010 4 436097315 436101886 ECH