Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5007 ATGGGGAAGAAAGGAAGTAGTTCATGGTTAACTGCTGTTAAAAGGGCATTCAGATCTCCAACAAAAGATAGTGAGAAGAGAAGTGGTAGAAGAAGAGAAGATTGTGATCAAGAAGAAGATGAAGAAAAGAAGAGAGAAAAAAGAAGATGGATTTTTAGAAAACCTGTTGTGAATCATGAAACTGTGAACAATAATACTCAGCAAAGTACACCAACAAAGTTGAAGCATGATGTTGTTGTTGCTACTGCTGCAAGTGTGGCTTCTTCAAGGACAGATCAAGATGAAAAGCATGCTCTTGCTGTGGCTATGGCTACTGCTGAAGCAGCAAGAGCCACTGCTCAAGCTGCTATGGAAGTTGCAAGGTTGACTAAGCCTACAAATTATGCTAGAGAGCATTGTGCTGCTGTGGTGATACAAACTTCTTTTAGAGGCTACTTGGCAAGAAGAGCGCTTCGAGCACTTAAGGGGTTGGTGAAGTTGCAAGCATTAGTGAGAGGTCACAATGTTAGGAAACAAGCAAAAATGACACTTAGATGCATGCAAGCTCTTGTTAGAGTGCAAGCAAGAGTTCTTGACCAAAGGGTAAGGTCTACTTCACATGATGGAAGTAGAAAATCGACCTTTAGTGACACTACTAGTGTTTGGGATTCGCGGTATCTTCAAGACATTTCAGACAGAAAATCAATATCGAGAGAAGGAAGTAGTGTTGCAGATGATTGGGATGATCGTCCACACACAGTTGAAGAAGTTAAGGCCATGTTGCAACAGAGGAAGGAAGCAGCTATGAAGAGGGAAAAGTCCTTGTCACAAGCTTTTTCCCAACAGATTTGGAGAAATGGAAGAACATCATCAATTGGAAATGAAGAAGAACTTGAAGAGAGACCAAAATGGTTGGATAGATGGATGGCCACAAAACCATGGGAGAATAGAGGAAGAGCTTCAACTGATCAAAGAGACTCTATCAAGACAGTAGAAGTTGACACATCTCAACCTTATTCATATCTAGGAACAAACTACAGAAGATCACATCCAAATTACCAATACAATCCAAACCACCAACCACAAAGACACTCCATTGCTTCACCACTCCATAGAACACACCAAAATGGATCCCTTAACCAATCCGTAACCACTCCGTCTCCGGCCAAATCAAGACCTATTCAAGTCCGGTCGTCGAGTCCTCGTTGTGTTAGAGAAGATAGAAGCTACCACCACACATCTCAAACACCAAGCTTAAGGTCTAACTACCATTACAACGGAAACTTGTACCAAAATAGTAGAGTTGGAACAAGCAATGGTGTTTCCAATGCTACACCTACATTGCCTAATTACATGCAAGCGACCGAGTCTGCAAAGGCTCGGATTCGCTCGCAGAGTGCGCCGAGACAAAGGCCATCGACGCCAGAGCGAGATAGATCCGGATCAGTAAAGAAAAGACTTTCTTTCCCTGCTCCGGATCCTTATAATGTAGGAGGAGTTGGTTATGGAAATTATGGACATAGTTTAAGAAGTCCAAGTTTCAAGAGTGTGAATGTAACATCACATTTCGGGTTAGAGCAACATTCTAACTACTCTTCGTGTTGCACCGAGAGTCTCGGTGGCGAGGTTTCGCCTTCTTCAACCGGTGACCTTAGAAGGTGGTTGAGATGA 1650 0.4273 MGKKGSSSWLTAVKRAFRSPTKDSEKRSGRRREDCDQEEDEEKKREKRRWIFRKPVVNHETVNNNTQQSTPTKLKHDVVVATAASVASSRTDQDEKHALAVAMATAEAARATAQAAMEVARLTKPTNYAREHCAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRVRSTSHDGSRKSTFSDTTSVWDSRYLQDISDRKSISREGSSVADDWDDRPHTVEEVKAMLQQRKEAAMKREKSLSQAFSQQIWRNGRTSSIGNEEELEERPKWLDRWMATKPWENRGRASTDQRDSIKTVEVDTSQPYSYLGTNYRRSHPNYQYNPNHQPQRHSIASPLHRTHQNGSLNQSVTTPSPAKSRPIQVRSSSPRCVREDRSYHHTSQTPSLRSNYHYNGNLYQNSRVGTSNGVSNATPTLPNYMQATESAKARIRSQSAPRQRPSTPERDRSGSVKKRLSFPAPDPYNVGGVGYGNYGHSLRSPSFKSVNVTSHFGLEQHSNYSSCCTESLGGEVSPSSTGDLRRWLR* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5007 549 MobiDBLite consensus disorder prediction 448 485 - -
Psa4g5007 549 Gene3D - 129 183 - -
Psa4g5007 549 SMART iq_5 130 152 IPR000048 GO:0005515
Psa4g5007 549 SMART iq_5 153 174 IPR000048 GO:0005515
Psa4g5007 549 MobiDBLite consensus disorder prediction 308 335 - -
Psa4g5007 549 ProSiteProfiles IQ motif profile. 155 182 IPR000048 GO:0005515
Psa4g5007 549 MobiDBLite consensus disorder prediction 530 549 - -
Psa4g5007 549 MobiDBLite consensus disorder prediction 308 323 - -
Psa4g5007 549 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 549 - -
Psa4g5007 549 PANTHER IQ-DOMAIN 5-RELATED 1 549 - -
Psa4g5007 549 MobiDBLite consensus disorder prediction 448 464 - -
Psa4g5007 549 MobiDBLite consensus disorder prediction 1 46 - -
Psa4g5007 549 MobiDBLite consensus disorder prediction 369 415 - -
Psa4g5007 549 MobiDBLite consensus disorder prediction 18 46 - -
Psa4g5007 549 Pfam IQ calmodulin-binding motif 158 174 IPR000048 GO:0005515
Psa4g5007 549 Pfam IQ calmodulin-binding motif 132 152 IPR000048 GO:0005515
Psa4g5007 549 MobiDBLite consensus disorder prediction 369 391 - -
Psa4g5007 549 ProSiteProfiles IQ motif profile. 131 159 IPR000048 GO:0005515
Psa4g5007 549 Pfam Protein of unknown function (DUF4005) 393 496 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5007 Psa-Chr4 435836176 435840197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5007 1 549 IQD Protein Family AT1G01110 58.070 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5007 - - gmx:100786729 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5007 4 435836176 435840197 Psa4g5007 4 435836176 435840197 ECH