Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5004 ATGAGTAATAAGGTTCATCCGATTCCTCCTCGTACTCGAGTTGGGAAGTATCAGTTGGGGAAGACGATTGGAGAAGGAAGCTTTGCGAAGGTGAAATTGGCGAAGAATGTTGAGAATGGAGATTTTGTTGCTATCAAGATTCTTGATCGTAATCATGTGCTTCGTCATAATATGATGGATCAGCTGAAGAGAGAAATTTCGGCGATGAAGATGATTAATCATCCGAACGTTGTCAAGATATTTGAGGTGATGGCAAGTAAAACAAAGATTTACATTGTCTTGGAGTTGGTTAATGGAGGAGAATTATTTGACAAAATTGAAGGTGAACTTCTCCGCACGGCTTGCGGAACACCGAATTACGTTGCTCCTGAGGTGATTAATGATAGAGGTTATGTTGGTTCAACATCTGATATATGGTCTTGTGGAGTTATTCTCTTTGTACTTATGGCCGGGTACTTGCCGTTCGACGAGCCGAATCAAATTACACTTTACAGAAAAATTGGTAGGGCTGAGTTCACATGTCCGCCGTGGTTTTCGCCCGAGGCAAAGAAACTGCTCAAGTCTATCCTTAATCCAAACCCTCTCACGAGGATAAAAATTCCGGAACTCTTGGAAGATGAATGGTTCAAAAAAGGATACAAGCCAGCATCTTTTACCGAGGAAGATGTCAATGTAGATGATGTTGCTGCTGCTTTCAACGATTCTAAGGAAAATCTTGTGACAGAGACCAAAGAGAAACCCGTGTCGATGAATGCTTTCGAGCTTATTTCTAGATCACAAAGCTTCAATCTTGACAATTTATTCGAGAAGCAAAAGGGAGTTGTAAAGCGCGAAACTCATTTCACTTCACAACGCCCCGCGAATGAAATCATGTCTAAGATCGAAGAGGCTGCAAAGCCTCTCGGATTTAATGTTCACAAGCGAAATTACAAGATGAAGCTGCAAGGTGACAAAAGTGGAAGGAAAGGTCACCTTTCAGTGGCTACTGAGGTTTTTGAAGTGGCTCCCTCCCTACATATGGTGGAGCTGAGGAAGACTGGCGGCGACACACTAGAGTTTAACAAGTTTTACAAAATATTTTCATCAGGGTTGGAAGACATAGTGTGGCATAATGACAAAAAATAA 1125 0.4178 MSNKVHPIPPRTRVGKYQLGKTIGEGSFAKVKLAKNVENGDFVAIKILDRNHVLRHNMMDQLKREISAMKMINHPNVVKIFEVMASKTKIYIVLELVNGGELFDKIEGELLRTACGTPNYVAPEVINDRGYVGSTSDIWSCGVILFVLMAGYLPFDEPNQITLYRKIGRAEFTCPPWFSPEAKKLLKSILNPNPLTRIKIPELLEDEWFKKGYKPASFTEEDVNVDDVAAAFNDSKENLVTETKEKPVSMNAFELISRSQSFNLDNLFEKQKGVVKRETHFTSQRPANEIMSKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFNKFYKIFSSGLEDIVWHNDKK* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5004 374 Pfam NAF domain 247 307 IPR004041 GO:0007165
Psa4g5004 374 Gene3D Phosphorylase Kinase; domain 1 9 96 - -
Psa4g5004 374 Gene3D Kinase associated domain 1, KA1 244 370 - -
Psa4g5004 374 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 110 372 - -
Psa4g5004 374 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 11 106 - -
Psa4g5004 374 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Psa4g5004 374 Pfam Protein kinase domain 111 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g5004 374 Pfam Protein kinase domain 17 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g5004 374 SUPERFAMILY Protein kinase-like (PK-like) 14 220 IPR011009 -
Psa4g5004 374 PANTHER - 110 372 - -
Psa4g5004 374 PANTHER - 11 106 - -
Psa4g5004 374 CDD CIPK_C 251 366 - -
Psa4g5004 374 Gene3D Transferase(Phosphotransferase) domain 1 102 234 - -
Psa4g5004 374 ProSiteProfiles NAF domain profile. 245 269 IPR018451 GO:0007165
Psa4g5004 374 ProSiteProfiles Protein kinase domain profile. 17 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5004 Psa-Chr4 435804042 435806815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g5004 107 372 CBL-interacting serine-threonine protein kinases AT1G01140 73.529 1.99e-147 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Psa4g5004 Pkinase 6.7e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5004 - - gmx:100794136 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5004 4 435804042 435806815 Psa4g5004 4 435804042 435806815 ECH