Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4994 ATGTTTGAATTAGAAACTATGGAGTATGGTCAATACAGTAGCTATTCAGCAGAAGCAGCAGCAGAGGAAGAAGCTTATGCAACTAGCAGCACATCTTCCATGATGAGAAAGAAGAAAAACAAGAATACAAAAAGGTTTAGTGATGAACAAATCAAATCATTGGAAACCATGTTTGAGACTGAGACAAGACTTGAACCAAGAAAGAAGCTGCAGTTGGCAAGAGAGCTTGGGTTGCAGCCAAGACAAGTTGCTATATGGTTTCAAAATAAGAGAGCTAGATGGAAATCAAAGCAACTTGAAAGAGAGTATAATAAACTTCAAAATAGTTATAATAGTTTGGCTTCAAGATTTGAATCAATGAAGAAGGAAAAACAAACATTACTCATACAGTTGCAGAAGCTGAATGATCTAATACAGAAGCCAATAGAGCAAAGTCAGAGTTCATCACAAGTTAAAGAAGCGAACAGCATGGAAAGTGAATCAGAAAATGGAGGAACAATCAAATGTGAGGCTGAGGTGAAACCAAGTACTTCGATGGAAAGATCAGAACATGTTCTTGATGTTGTATCAGATGATGACACAAGCATAAAAGTTGAATATTTTGGGCTTGAAGATGAACATGGACTTATGAGTTTTGCTGAACATGGTGATGGATCATTAACTTCACCAGAAAATTGGAGTGGTTTTGAATCAAATGATCTGTTAGGCCAATCAAGTTGTGATTATCAATGGTGGGACTTTTGGTCTTGA 750 0.3667 MFELETMEYGQYSSYSAEAAAEEEAYATSSTSSMMRKKKNKNTKRFSDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNSLASRFESMKKEKQTLLIQLQKLNDLIQKPIEQSQSSSQVKEANSMESESENGGTIKCEAEVKPSTSMERSEHVLDVVSDDDTSIKVEYFGLEDEHGLMSFAEHGDGSLTSPENWSGFESNDLLGQSSCDYQWWDFWS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4994 249 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Psa4g4994 249 CDD homeodomain 46 98 IPR001356 GO:0003677
Psa4g4994 249 Gene3D - 28 102 - -
Psa4g4994 249 PRINTS Lambda-repressor HTH signature 68 77 IPR000047 GO:0003677
Psa4g4994 249 PRINTS Lambda-repressor HTH signature 77 93 IPR000047 GO:0003677
Psa4g4994 249 Pfam Homeobox associated leucine zipper 97 138 IPR003106 GO:0006355|GO:0043565
Psa4g4994 249 Coils Coil 89 137 - -
Psa4g4994 249 MobiDBLite consensus disorder prediction 26 46 - -
Psa4g4994 249 MobiDBLite consensus disorder prediction 142 163 - -
Psa4g4994 249 ProSitePatterns 'Homeobox' domain signature. 72 95 IPR017970 GO:0000981|GO:0006355
Psa4g4994 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 20 249 IPR045224 GO:0003700
Psa4g4994 249 SMART HOX_1 37 101 IPR001356 GO:0003677
Psa4g4994 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 20 249 - -
Psa4g4994 249 SUPERFAMILY Homeodomain-like 26 99 IPR009057 -
Psa4g4994 249 Pfam Homeodomain 44 95 IPR001356 GO:0003677
Psa4g4994 249 MobiDBLite consensus disorder prediction 142 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4994 Psa-Chr4 434623910 434625992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4994 45 249 Homeobox Transcription Factor Family AT3G61890 55.450 4.01e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa4g4994 Homeodomain 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4994 K09338 - gmx:100811208 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4994 4 434623910 434625992 Psa5g1726 5 134248132 134250091 ECH
Psa4g4994 4 434623910 434625992 Psa4g4994 4 434623910 434625992 ECH