Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4964 ATGTCGCAACCACAACAACATCTCAACAGCAACATCCCCGTAAGCGAGATTTTCTGGACTCTCGTCGACAAAGCCGACAAAAAATTCTCCAAAATCAGAGACTTACCTTACTACCAACGCAGCAGGCATGATACATATTTCTCTAAGGTCTTCAAAGTCTACACACAGTTATGGAAATTTCAACAAGAGAATCGTCAGAAGCTAATTGAAGCCGGGTTAAAGCGATGGGAAATCGGCGAAATCGCGTCTCGAATCGGCCAGCTCTATTTCGGACAGTACATGCGAACATCTGATTTTAATTACTTATCAGAATCTTTCATTTTCTATGAAGCTATTTTCACTCGTGATTATTTCAAAGACGGTTTGTTTCAGGATGTTAATATTGCGAATAAGCAATTGAGATTCTTAGCTAGGTTTTTGACTGTGTGTTTGCTTTTGAATCGGAGGGAAATGCTGCAGCAGTTGGTTAATCAGCTTAAAGTGTTGGTTGATGAGTGTAAGAGAGTGTTTCAGGATAGTGATTTTAAGGAATGGAAGGTTGTTGTTCTGGAAATTGGGAGGTTTTTGAAAGCGGATACTGCTTTTATGAATGTCAGACCGTTGAGATATAGTTTGGTTTTGGATTCTCATCCTGATAATTTGCCACATGTTCCTGTAGCTATTGCGAAGCGAAATTTGAAATTGCGAGATGCTGTGTTGAGTAGCTTCCATCACAACGAGGTTAAGTTTTCGGAGCTCACTATTGACACTTTTAGGATGCTTCAATGTTTGGAGTGGGAACCTAGTGGCTCGTTTTATCAATCTAGTGGCTCAAAACTTAGTCAGAATGGGCAACTGGGACGGTCGTATCATTCTTCGGATCGAATCGGGCTTCTGATCCATTCGTGTTCTTGCACAGCATATTTTGAGGAGCTTCCATCGGAGATTTCCTTTAATCTTGTCACTCAGGAGTATCTCCATTACACGACTCCTCATAGGATGTCAAGAAACTACCTCGCACATACTCAAGGCAAACACCATCAAACCAATCTCGCTAAGCGGGCTGCTCGTGAAGCTAAAGATGCTCCCACTCAACCTCATAAGCGGAAGCTTAACCTTAAGAAAACCGTTGCTGCAACTGAAACAGTTGCTGCAACTGAAACAGTTGCTGCAACTGAAACAGTTGCTGCAACTGAAACAGTTGCTGCAACTGAAACAGTTGCTGCAACTGAAACAGTTGCTGCAACTGAAACAGTTGCTGCAACTGAAACAGTTGCTGCAACTGAAACAGTTGCTGCAACTGAAACAGTTGCTGCAACTGAAACAGTTGCTGTAACTGAAACAGTTACAGTAACTGAAACAGTTACAGTAACTGAAAGACTAACCGAAACATACCTTTTAGTATTGGGTATGGTAGTTGGAGTTCAATTTCAACCATCCATACGCGACACAGTTGACAGCAACAGCTGCTACAACACATTTTATTCCGATTCTGTTGCAGTTTTACACGGGCTTTTTTCAGTGTTAATTTTAATTGCCGCTCTTGCAGAACCGGCGAATAACCACAAAACAGAAACTGGCATAATTCTTCTGTCGATCATGGGATTCGCATACTTCTCAAATTTTCTTTCAAAAGATCAAGGTTTGAGATCTTTGTTTATGTGGTTCTGTGCGTTGGTTTTGGTTCTGATATGTAGAAAAGCCCGAGAGCTATTTCATCATCGAAAGAATAATCCCACTGCAAATCCTATCTCAAACGACAACCTTGCGCTGAAGTCAACAACTCTGACACAGACACAACCAACCATAGCTTCAACGCATCTCCTGAGCATCGGGAGTTCTGACAACTTTCTCCAGCCGCGTATTGCTCAGTGCCTCAAATTACCAATTCAATCTGCTGAGCACTTCACAGTTCTGGTTGGCAATGGAAATTCCTTAACTACATCTGGATACATAGCATTTTTACCGGTGGCAATACAAGGTCACACACTTCACATTCCAGTATATCTTCTTCCTATCACAGGGGCTGATTTGGTCTTGCGAGCACCGTGGTTAAAAACCCTCGGTCCACATATAGCTGACTACAATGCACTATCCATCAAATTTTATGCCGACAACACTTTTGTCACTCTATACGGGGAAAGACACAAGAGTCCCAGCCTAGCACATTACCATCACATTAAGAGACTTCATCACACTGATGCCATTGATGCATCATTCACACTGCAATGCCGGAAAGTGGAACCGATTGAGGGTCCCTCTTCAGTCCCTGTACACCCGGATTTGACAGCTTTACTCTCACAATTTGATGATATATTTGCTGAACCACAAGGCCTGCCACCTGAACGATTACAGGACCATGCTATTCCCTTAATTGAAGGTAGTAATCCCGTTAAGGTACGTCCATATCGCTACCCACATAGCCAGAAAGCTCAAATTGAAAAAATGGTTTTAGAGATGTTGAACCAAGGATCGAACTGCATATATCCATCTGACTTTCTACCGTTTACTAGAAGACCACTTCTTTTAGTCATTGATAATGACAACAGCAATGCTTTTAAGGTCATAGCAGAGGCAAGTAAAGGAGAGTCAGTGGCAATGCTCCTTTCTCCAAGCCGTTTGCCTCCTATTGCGTCTGATTTCTCACATACTCAAATGGGAGTTATTCACCATTTTCTTACAGCTCCGCAAGCTTCTGTCTGCTGCTAG 2688 0.423 MSQPQQHLNSNIPVSEIFWTLVDKADKKFSKIRDLPYYQRSRHDTYFSKVFKVYTQLWKFQQENRQKLIEAGLKRWEIGEIASRIGQLYFGQYMRTSDFNYLSESFIFYEAIFTRDYFKDGLFQDVNIANKQLRFLARFLTVCLLLNRREMLQQLVNQLKVLVDECKRVFQDSDFKEWKVVVLEIGRFLKADTAFMNVRPLRYSLVLDSHPDNLPHVPVAIAKRNLKLRDAVLSSFHHNEVKFSELTIDTFRMLQCLEWEPSGSFYQSSGSKLSQNGQLGRSYHSSDRIGLLIHSCSCTAYFEELPSEISFNLVTQEYLHYTTPHRMSRNYLAHTQGKHHQTNLAKRAAREAKDAPTQPHKRKLNLKKTVAATETVAATETVAATETVAATETVAATETVAATETVAATETVAATETVAATETVAATETVAATETVAVTETVTVTETVTVTERLTETYLLVLGMVVGVQFQPSIRDTVDSNSCYNTFYSDSVAVLHGLFSVLILIAALAEPANNHKTETGIILLSIMGFAYFSNFLSKDQGLRSLFMWFCALVLVLICRKARELFHHRKNNPTANPISNDNLALKSTTLTQTQPTIASTHLLSIGSSDNFLQPRIAQCLKLPIQSAEHFTVLVGNGNSLTTSGYIAFLPVAIQGHTLHIPVYLLPITGADLVLRAPWLKTLGPHIADYNALSIKFYADNTFVTLYGERHKSPSLAHYHHIKRLHHTDAIDASFTLQCRKVEPIEGPSSVPVHPDLTALLSQFDDIFAEPQGLPPERLQDHAIPLIEGSNPVKVRPYRYPHSQKAQIEKMVLEMLNQGSNCIYPSDFLPFTRRPLLLVIDNDNSNAFKVIAEASKGESVAMLLSPSRLPPIASDFSHTQMGVIHHFLTAPQASVCC* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4964 895 CDD retropepsin_like 605 679 - -
Psa4g4964 895 Gene3D Acid Proteases 599 704 IPR021109 -
Psa4g4964 895 PANTHER PROTEIN SCAI 814 894 - -
Psa4g4964 895 PANTHER PROTEIN SCAI 3 282 - -
Psa4g4964 895 Pfam Protein SCAI 21 283 IPR022709 GO:0003714|GO:0006351
Psa4g4964 895 Pfam Protein SCAI 803 894 IPR022709 GO:0003714|GO:0006351
Psa4g4964 895 PANTHER TRANSDUCER, PUTATIVE (DUF3550/UPF0682)-RELATED 3 282 - -
Psa4g4964 895 PANTHER TRANSDUCER, PUTATIVE (DUF3550/UPF0682)-RELATED 814 894 - -
Psa4g4964 895 SUPERFAMILY DNA/RNA polymerases 758 818 IPR043502 -
Psa4g4964 895 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 771 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4964 Psa-Chr4 430539011 430549196 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4964 325 370 C2H2 Transcription Factor Family AT2G32600 70.833 7.58e-13 68.2