Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4957 ATGCCTGATAACATGAGCATATCTGTTAATGGACAATCTCAAGTCCCTCCTGGATTCAGGTTTCATCCAACTGAAGAAGAACTTCTTCAATACTATTTGAGGAAAAAAGTCTCTTATGAGAAGATTGATCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGATATACAAGAGAAATGCAAAATAGGAACAACTCCACAAAATGATTGGTATTTCTTTAGTCACAAAGACAAGAAGTATCCAACCGGGACGCGAACCAATCGCGCCACGGCTGCTGGGTTCTGGAAAGCCACCGGACGTGACAAAGTTATTTATAGCAATGGAAAAAGGATTGGAATGAGGAAGACTCTTGTTTTCTACAAGGGTCGCGCTCCTCATGGCCAAAAATCGGATTGGATCATGCACGAGTATAGACTCGACGATAACACCACCACCAACGACGCTAATCTGGTGTCGAATGTGATTGGTGATGGTGGTCAAGAAGAAGGATGGGTGGTGTGTAGGATATTCAAGAAGAAGAATCATCTCAAAACCCTAGACAGCCCATTAGGCTCTGGAGAGGGAAGAAGAAACCATCATTTGTATGATAATTGTGATGAAGGAGCTTTGGAGCAAATACTTCAACAAATGGGAAGAGGTGGTTGCAAGGAAGAGAATTATGAAGCAAATTACAATAACAATAATTATGGAAGGTTTACAAGGCCTTATGAAACTAGCCTCAACAACAATGGTGGTTATAACAATGAAAGGTTCATGAAACTTCCAAGTTTAGAGAGTCCAAAATCAACAAGCATGGAGAACAATGAGAACAACAATGATGGGTACCATGCAATTATTCAAGTGGATGTGGCTAATGAAAATGAAGGGTCATTCAGTAATCAACATCATCATCACCATAACAACAACATGGTTAATAATCCATTAGAAGCATCATCATCATCAATGGTTATAGCATCATGTGGTGATGGTGGTCTTGCTAATTGGGTAGCTTTGGATAGGCTTGTTGCTTCTCAATTGAATGGACAAACTGAAACTTCTAGGCAATTGGCTTGCTTCAATGACCCCACAATGGGATATTGCACTAATGATCATGATCTCCAACTTCCAACTCTTAGATCTTCGTCATCAACTTCATCTATATCGACGCAAGCTAGAGCTATTACTTCTACAACTACTGCTACTACTACTTACATTAGTCCCTCACATGATTATGCGAGTGAGATTGATCTTTGGAACTTCGCTCGATCAACTTCTTCATTGTTGTCATCTTCTGAACCACTCTGCCATGTCTCAAATACGTCAGCGTGA 1320 0.403 MPDNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTTNDANLVSNVIGDGGQEEGWVVCRIFKKKNHLKTLDSPLGSGEGRRNHHLYDNCDEGALEQILQQMGRGGCKEENYEANYNNNNYGRFTRPYETSLNNNGGYNNERFMKLPSLESPKSTSMENNENNNDGYHAIIQVDVANENEGSFSNQHHHHHNNNMVNNPLEASSSSMVIASCGDGGLANWVALDRLVASQLNGQTETSRQLACFNDPTMGYCTNDHDLQLPTLRSSSSTSSISTQARAITSTTTATTTYISPSHDYASEIDLWNFARSTSSLLSSSEPLCHVSNTSA* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4957 439 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Psa4g4957 439 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 389 - -
Psa4g4957 439 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Psa4g4957 439 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Psa4g4957 439 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 9 389 - -
Psa4g4957 439 SUPERFAMILY NAC domain 9 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4957 Psa-Chr4 429496798 429499066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4957 1 439 NAC Transcription Factor Family AT2G46770 51.902 4.33e-135 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa4g4957 NAM 4.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4957 - - ahf:112734309 599.742