Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4947 ATGGGAAGAGCTCCATGCTGTGCCAAAGTTGGATTGCACAAAGGTCCATGGACTACTAAAGAAGATGCATTGCTCACCAAATATGTTCAAGCTCATGGTGAAGGCCAATGGAAATCACTTCCCAAAAAAGCTGGACTTCTTAGATGTGGAAAAAGTTGTAGACTTAGATGGATGAATTATCTTCGACCGGATATAAAAAGAGGAAACATAACTCAAGAAGAAGATGATCTCATAATAAGATTACATTCTCTTATTGGAAATAAATGGTCACTTATAGCAGGAAGATTACCGGGAAGAACAGATAACGAAATAAAGAATTACTGGAACACGCATCTTCTCAAAAAGATCCAAAGAAATGAACAAACATGTAATGTTACAGAACATGAAGAACAAGAACAAAGAAAAACCAAGAAAAACAACAACGTTGGTGGAAACAAAAAGAAGAAGAATAACAATAACAAGCAAAAGAAAAACGACAAGAAAAAAGGTAGTGATCAAGAGGAAGAGAAAATTCAAGTTTATTTACCGAAACCTATTAGGATTAAGGCTTTAACTTTACCAAGAACAGACAGTGGTTCATTTACGTTTGAGTCAAATTCTTCATCTGGTAGCCAACAAAAACAAGGAACGGAACAACAAGTGACGATAAACATAAACAACAACGTTGTTTGCGAGGTTGGTGAGGTTGGTGAAAATGACGGATTTGGGCTCTCCAGTGATGACCATGACTTAGTCAACGATATTGGATGCGAATCGTATTTCGACACGTGTAATGATCGTGGAACACTAGAGAGACTCTATGACGAATATTTCCAGCTCTTGAACGTGGATGGTATTTGCAATTTCGAGTTTGATTCTTTTGCTGAATCAATCTTTGATTGA 882 0.3685 MGRAPCCAKVGLHKGPWTTKEDALLTKYVQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITQEEDDLIIRLHSLIGNKWSLIAGRLPGRTDNEIKNYWNTHLLKKIQRNEQTCNVTEHEEQEQRKTKKNNNVGGNKKKKNNNNKQKKNDKKKGSDQEEEKIQVYLPKPIRIKALTLPRTDSGSFTFESNSSSGSQQKQGTEQQVTININNNVVCEVGEVGENDGFGLSSDDHDLVNDIGCESYFDTCNDRGTLERLYDEYFQLLNVDGICNFEFDSFAESIFD* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4947 293 Gene3D - 14 66 - -
Psa4g4947 293 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa4g4947 293 MobiDBLite consensus disorder prediction 140 156 - -
Psa4g4947 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa4g4947 293 CDD SANT 16 61 IPR001005 -
Psa4g4947 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa4g4947 293 MobiDBLite consensus disorder prediction 123 139 - -
Psa4g4947 293 MobiDBLite consensus disorder prediction 123 169 - -
Psa4g4947 293 SMART sant 13 63 IPR001005 -
Psa4g4947 293 SMART sant 66 114 IPR001005 -
Psa4g4947 293 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa4g4947 293 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa4g4947 293 PANTHER MYB TRANSCRIPTION FACTOR 1 278 - -
Psa4g4947 293 CDD SANT 71 112 IPR001005 -
Psa4g4947 293 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa4g4947 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa4g4947 293 MobiDBLite consensus disorder prediction 193 212 - -
Psa4g4947 293 Gene3D - 71 144 - -
Psa4g4947 293 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4947 Psa-Chr4 428555274 428556287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4947 1 116 MYB Transcription Factor Family AT4G38620 75.000 9.51e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa4g4947 Myb_DNA-binding 8.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4947 K09422 - gmx:100101857 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4947 4 428555274 428556287 Psa4g4947 4 428555274 428556287 ECH
Psa3g0041 3 7743035 7743940 Psa4g4947 4 428555274 428556287 PCT