Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4939 ATGGAACAACTTCAAGCATCTACTGATCAGGAACTGAACCAGGAAATTCCTCATTTCAATCTACCGTCGAAGATTTTATGCCGTGTTGTCAACATTCAGTTGTTGGCGGAACAAGAAACTGATGAGGTTTATGCTTGTGTTGCTTTGCTTCCAGAATCTGATCAAACTGAACCTGCAGATCCTGATCCGAATCCTCCCGAGTCTCCGAAACAAAAGTTTCACTCATTTTGTAAAATATTAACTGCTTCTGATACTAGCACACATGGAGGATTTTCGGTTCTGAGGAAGCATGCTACCGAGTGCTTGCCGCCATTGGACATGACACAAGCAACTCCTACTCAGGAGTTAGCTGCGAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCACATATATAGAGGCCAACCAAGACGACACTTGCTTACAACCGGTTGGAGTACTTTCGTCGCATCCAAAAGATTGGTGGCCGGAGACGCCTTTGTTTTCTTAAGGGGAGAACACGGGCAACTGAGAGTTGGCGTTCGGCGTATGGCTAAGCAACTCAATCCCATGCCTTCATCTGTAATATCAAGCCAAAGCATGCATCTCGGAGTTCTTGCCACTGCATCTCACGCTGTTATGACTCGAACCTTGTTCGTCGTTTATTACAAACCAAGGACTAGTCAATTTATCGTTGGCTTGAACAAGTATTTGGAGGCCGTCAACAATAGTAAGTTTTCGGTTGGTATGAGATTCAAGATGAGATTCGAAGGAGAAGACGCACCCGAAAGAAGATTTTCTGGCACTATTGTTGGTGTTGGAGATTTGTCTGCAGGATGGTCAAATTCTCATTGGAGATCATTGAAGGTTCAATGGGATGAACCCGCAACAATTCCAAGACCAGAGAGAGTTTCTTCATGGGAGATAGAACCTTTCATAGCTTCTCCTCCTTTGAGTGTCGCACAAACATCAGCTAAGAGCAAAAGATCTCGACCTGCCGACGTTTCATCTTGCGGTTTTTGGTATCCGAAATCGTCCCAAGTTCACGAGCTTCCTCAATTATCTGGTTCCGCCGAAGTCCAAACCAAGGAGAATCAGATTATAACCTCTAGAGTCACGACGGAAACAATTTGGCCTAATTCACCGCATTTGAATCTCACTTCAAACCCTTATGCTATCATAAACATTGCATCTAAACCTAGCAACGGCCTCAACGGCCCTACGTGCGATCACCATCGAGTCGAAGACGCGAAAAAGAACACGAACCCCCTAGATTGTTGGTTATTCGGAGTTAACTTAAACAACAACAACAAACCAAACAACCTTGTTAATTCTTGTTTAGAGAAAGAACATGGATTTCCAAAATTAACCATTGTTACTACAAGTGGTCCCAAGGAATCTATTATCCTTACAAATGCATGTGAAACTGAAAAGGCTCAGAGTCCCAACTATTCACTGTCCTCCAAAGGGCATCAGAAGAAAATTATTTCTGATACATCAACAAATGAATGGCAGAACAAGCTGGCCAATGTACCTTCCATGAGAACAAGGACTAAGGTGCAAATGCAAGGCGTAGCGGTTGGTCGCGCGCTCGATTTGAGCATGTTAAGTGGTTATGACGAACTCATTGATGAAGTTGAGAAACTGTTTGATATAAAAGGAGAGTTACGTTCACAAAACAAATGGAGAGTTACTTTCACTGATAATGAAAATGACATGATGCTTGTTGGTGATGATCCATGGCAGGAATTTTGCAACATGGTGAAAAAGATTTTCATTTGTTCAAAAGAAGAGTTAAAGAAAATGAAATGCAAGTTACCTAATTCTTCATTAGAGATTGAAGAGACATTGTTGAGTTTAGATTCACATAATAGGGACGAGAATCAACAAACTCATGTGATTTAG 1884 0.4204 MEQLQASTDQELNQEIPHFNLPSKILCRVVNIQLLAEQETDEVYACVALLPESDQTEPADPDPNPPESPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGQLRVGVRRMAKQLNPMPSSVISSQSMHLGVLATASHAVMTRTLFVVYYKPRTSQFIVGLNKYLEAVNNSKFSVGMRFKMRFEGEDAPERRFSGTIVGVGDLSAGWSNSHWRSLKVQWDEPATIPRPERVSSWEIEPFIASPPLSVAQTSAKSKRSRPADVSSCGFWYPKSSQVHELPQLSGSAEVQTKENQIITSRVTTETIWPNSPHLNLTSNPYAIINIASKPSNGLNGPTCDHHRVEDAKKNTNPLDCWLFGVNLNNNNKPNNLVNSCLEKEHGFPKLTIVTTSGPKESIILTNACETEKAQSPNYSLSSKGHQKKIISDTSTNEWQNKLANVPSMRTRTKVQMQGVAVGRALDLSMLSGYDELIDEVEKLFDIKGELRSQNKWRVTFTDNENDMMLVGDDPWQEFCNMVKKIFICSKEELKKMKCKLPNSSLEIEETLLSLDSHNRDENQQTHVI* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4939 627 SUPERFAMILY DNA-binding pseudobarrel domain 67 205 IPR015300 -
Psa4g4939 627 CDD B3_DNA 74 176 IPR003340 GO:0003677
Psa4g4939 627 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 369 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa4g4939 627 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 403 602 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa4g4939 627 ProSiteProfiles PB1 domain profile. 508 589 IPR000270 GO:0005515
Psa4g4939 627 Gene3D - 504 596 - -
Psa4g4939 627 Pfam B3 DNA binding domain 76 176 IPR003340 GO:0003677
Psa4g4939 627 Pfam Auxin response factor 202 282 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa4g4939 627 ProSiteProfiles B3 DNA-binding domain profile. 76 178 IPR003340 GO:0003677
Psa4g4939 627 Pfam AUX/IAA family 505 544 IPR033389 -
Psa4g4939 627 Pfam AUX/IAA family 551 591 IPR033389 -
Psa4g4939 627 SUPERFAMILY CAD & PB1 domains 503 584 - -
Psa4g4939 627 Gene3D - 238 308 - -
Psa4g4939 627 Gene3D - 73 177 IPR015300 -
Psa4g4939 627 PANTHER AUXIN RESPONSE FACTOR 11 403 602 - -
Psa4g4939 627 PANTHER AUXIN RESPONSE FACTOR 11 1 369 - -
Psa4g4939 627 SMART B3_2 76 178 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4939 Psa-Chr4 427868606 427872611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4939 1 608 B3 DNA Binding Superfamily AT3G61830 54.739 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa4g4939 B3 7.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4939 K14486 - gmx:100795763 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4939 4 427868606 427872611 Psa4g4939 4 427868606 427872611 ECH