Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4937 ATGTACTCCGCAGCCGAGACCATGAACCCTGCTGCCCACAACGCGGCGGCCGACAAAAACACCGGCTCCCGCTCACGGAAGAGAAAAGACCGTGATTTGAGAAAGGGTAAACCTAATGGGAGTTCAAAAAAACGGTTTCAACCAAATACTAATAACGAGGTCGTAGCAGAAGTAAATTTGAACAAAGGCGGTGATAGTAACGGTGGTTCTGGAAGTATCGTCGTAACTGATTCTTATTTAAGTGATTCCAGATTTGACAAATGTTCGGTTTCTCCATTGTCCTTGAAAGGAATCAAGGATGCTGGATATGAGAAAATGACTCTTGTTCAAGAGGCTACACTTCCAGCTATTCTAAAAGGTAAGGATGTATTGGCTAAAGCTAAAACAGGCACGGGAAAAACAGTTGCTTTTTTGCTTCCATCGATTGAAGTTGTTGTGAAGTCTCTGCCAATTGATCGTGGTCAAAAGCGGACACCAATTCTTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCTTGTCAAGCTGCTGCAGAAGCAACTAAACTGCTTAAGTATCATCCTACCATCGGTACTCAAGTTGTGATTGGAGGTACAAACCTTAGTTCAGAACAGAAACATATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTATAGATCACATTGAAAATACTGCCGGTTTTGCATCTAGGCTTATGGGGGTGAAGGCCTTGGTGCTCGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGATATTGAAAAAATAATTGCTGCAGTCCCTAAACAACGACAAACACTTATGTTTTCTGCAACCGTTCCGGACTCGGTGCATCAAGTCTGTAATATTGCGTTGAAAAAGGATTTTGAATTTATTAGTACAGTTCAGGAGGGTACCGAGGAGACACATTCAAAGGTCCACCAGATGCATTTAGTTGCCCCACTAGACAAGCATTTCTCTTTACTCTATGTTATTCTGAAGGAGCACATTGCTGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTTCTGATCTCCTTGGGAGGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTACAGAACCAGAATTTCTGATGAATTCCGCAGGTCAAAGGGTCTCATCCTTGTTACTTCGGATGTATCCGCACGCGGAGTTGATTATCCAGATGTTACTCTTGTTGTACAGGTTGGCCTACCGACTGATAAACAACAATATATACACCGGTTAGGTAGAACGGGGCGAAAAGGAAAAGAAGGGCAGGGCATACTGCTACTAGCTCCTTGGGAAGAGTTCTTTTTAGATTCCACAAAAGATTTGCCTATTGGGAAAGCTCCGGTACCTTCAGTTGATCCTGACACTAAGAAAAAGGTGGAAAGGGCTATATCCAATGTGGAGATGGAGAATAAAGAAAAAGCATATCAAGCATGGCTTGGTTACTACAATTCTAATAAGAAAGTTGGGAAAGATAAGAAGAAGTTAGTGGAGCTTGCAAATGAATTCAGTAGATGCATGGGGCTTGATACCCCTCCAGCTATCTCTAATCTTATCCTTCGCAAGATGGGTCTTAGAAATGTCCCTGGTTTACGTTCCAAATAG 1656 0.4251 MYSAAETMNPAAHNAAADKNTGSRSRKRKDRDLRKGKPNGSSKKRFQPNTNNEVVAEVNLNKGGDSNGGSGSIVVTDSYLSDSRFDKCSVSPLSLKGIKDAGYEKMTLVQEATLPAILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSLPIDRGQKRTPILVLVICPTRELACQAAAEATKLLKYHPTIGTQVVIGGTNLSSEQKHMQANPCQILVATPGRLIDHIENTAGFASRLMGVKALVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPDSVHQVCNIALKKDFEFISTVQEGTEETHSKVHQMHLVAPLDKHFSLLYVILKEHIADDVDYKVLVFCTTAMVTRLVSDLLGRLNLNVREIHSRKPQSYRTRISDEFRRSKGLILVTSDVSARGVDYPDVTLVVQVGLPTDKQQYIHRLGRTGRKGKEGQGILLLAPWEEFFLDSTKDLPIGKAPVPSVDPDTKKKVERAISNVEMENKEKAYQAWLGYYNSNKKVGKDKKKLVELANEFSRCMGLDTPPAISNLILRKMGLRNVPGLRSK* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4937 551 CDD DEADc_MSS116 90 299 - -
Psa4g4937 551 Gene3D - 306 532 IPR027417 -
Psa4g4937 551 MobiDBLite consensus disorder prediction 1 52 - -
Psa4g4937 551 SMART helicmild6 355 436 IPR001650 -
Psa4g4937 551 CDD SF2_C_DEAD 312 445 - -
Psa4g4937 551 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 53 549 - -
Psa4g4937 551 Gene3D - 31 297 IPR027417 -
Psa4g4937 551 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 492 IPR001650 -
Psa4g4937 551 SMART ultradead3 102 315 IPR014001 -
Psa4g4937 551 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 297 IPR014001 -
Psa4g4937 551 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 83 111 IPR014014 GO:0003724
Psa4g4937 551 Pfam DEAD/DEAH box helicase 108 285 IPR011545 GO:0003676|GO:0005524
Psa4g4937 551 Pfam Helicase conserved C-terminal domain 332 436 IPR001650 -
Psa4g4937 551 PANTHER RNA HELICASE 53 549 - -
Psa4g4937 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 451 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4937 Psa-Chr4 427434196 427438636 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4937 76 464 Eukaryotic Initiation Factors Gene Family AT3G19760 28.180 8.55e-46 164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4937 4 427434196 427438636 Psa4g4937 4 427434196 427438636 ECH