Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4935 ATGCCCACGAAACTATTCTTATCTCAAATACGTCTTCTTCACTTCCAACCCATGAAACCTCACTCTCCATTCCTCTCTCAAACTCTCGTCAAATTCTCTCACCTCCCACTCCGCAACGCCGCGTTTCGTCCCCGCTCTTTCTCCGTCCGTCCAGATAGAAATATGGCTTCCAAAAGCCTCGTTGACGACGAGGCTGAGCTTAGTAACTGGGTCGACGATTTGCAAACCGGTCGCGGTTCCGCCCAGACCATAAGGCCGGGTTCCGGTGCGGGTAAAGATAGCGGGTTCCGGTCACGGAAGAGTAATGTTGTTAGTAGGGGTTCTGGTTTGGGGCAGAGAAGAGGGGATGATTTTAGGAAGGGGAAACCTAATTTGAATTCGAAAAGGAGGTTTCCGTTGAGGAGTGATAGTAGTGATGATGAGGATGAGGTTGTGGCTGGAGGGAAGTTTAAGGGTGGTGGTGGTTCGGGAATAACTGGGTTGTCAACAACAACAACAACTCCTACACCTGCTTCACCTGGTGGAAGTGATTCTTATTTAAGTGAATCCAGATTCGACCAGTGTTCAGTCTCTCCACTGTCCTTGAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACTGTCGTGCAGGAGGCAACCCTTCCAGTGATTCTTAAAGGTAAGGATGTCCTAGCCAAGGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAATTGTTGTGAAGTCTCCACCAAGTGACCGTGATCAAAGGCGACCACCAATTTTTGTTCTTGTCATATGTCCTACCCGAGAACTTGCATGTCAAGCTGCTGCCGAAGCCACTAAACTGCTTAAGTATCATCCTACCTTAGGTGTTCAAGTTGTGATTGGAGGAACAAGACTTACTTTAGAACAGAAACGCATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTTGAAAATACCGCTGGTTTTGCATCCAGGCTTATGGGGGTGAAGGCCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGATATTGAGGGACAGATAATCGCTGCAATCCCTAACAACGAAGACACTTATGTTTTCTGCAACAATTCCCGACGAGGTGCGCCAAGTCTGCCATATTGCTATGAAAAGGGATTTTGA 1188 0.4697 MPTKLFLSQIRLLHFQPMKPHSPFLSQTLVKFSHLPLRNAAFRPRSFSVRPDRNMASKSLVDDEAELSNWVDDLQTGRGSAQTIRPGSGAGKDSGFRSRKSNVVSRGSGLGQRRGDDFRKGKPNLNSKRRFPLRSDSSDDEDEVVAGGKFKGGGGSGITGLSTTTTTPTPASPGGSDSYLSESRFDQCSVSPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEIVVKSPPSDRDQRRPPIFVLVICPTRELACQAAAEATKLLKYHPTLGVQVVIGGTRLTLEQKRMQANPCQILVATPGRLRDHVENTAGFASRLMGVKALVLDEADHLLDMGFRKDIEGQIIAAIPNNEDTYVFCNNSRRGAPSLPYCYEKGF* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4935 395 Gene3D - 164 384 IPR027417 -
Psa4g4935 395 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 183 211 IPR014014 GO:0003724
Psa4g4935 395 PANTHER RNA HELICASE 161 376 - -
Psa4g4935 395 PANTHER RNA HELICASE 31 129 - -
Psa4g4935 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 361 IPR027417 -
Psa4g4935 395 MobiDBLite consensus disorder prediction 132 147 - -
Psa4g4935 395 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 161 376 - -
Psa4g4935 395 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 31 129 - -
Psa4g4935 395 MobiDBLite consensus disorder prediction 157 180 - -
Psa4g4935 395 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 365 IPR014001 -
Psa4g4935 395 MobiDBLite consensus disorder prediction 76 180 - -
Psa4g4935 395 SMART ultradead3 202 394 IPR014001 -
Psa4g4935 395 Pfam DEAD/DEAH box helicase 208 368 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4935 Psa-Chr4 427309182 427312322 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4935 180 376 Eukaryotic Initiation Factors Gene Family AT5G11200 30.151 6.50e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4935 - - gmx:100795739 424.091