Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4919 ATGATCACGGGTTATGGAATGCATGGTTATGGTGATGAGGCATTAGACATATTTTCTCGTATGTGTCAAGCTCAATTGGTACCAAACGAAATCAGTTTTGTTGGATTGCTATCTGCATGCAGCCATGCTGGCATGGCACTAAAGCTAATCACCGGCATTTTAAAACTTTCCGCTGGCATATCAACAGAGCATATGATACCGTCAAAAGTGACGGAATACGGTTCAAATGGAAGAACCGTTCCTTCCTTCTTTCCATGGTTGGACTATGCAACAAAATATCCTCTTTCTGAACTCTTTAAAGCAAGACCACCTTTATGGAACACGGCGTTGCAAAGCGAGTCTTTTGATGATGACGAGCTTGAACACTTTGAAGATGTTATAAAAGAGACTGATAAAGAACCTGTAACCGTATCAGATAAAAGGGAAGAACCTGTAACCGTATCAGATAAAAGCGATGAACCTATATGGGAGTATCTCCGGGATGAAATTGAGTTAACTCAGAGATTTGCGAGCCTTGATTTCAAGTTGAAATTTGTGGAGCACAACATCCGATTTCTACAAGAAATTCTTCAAAACAGGAAATCCGATTTCCTAGAGTGGCTCATTATTACATTGATTGGAAGACAAAATCCAACTTATGCCACTGGACTCCTCTTGGCACGTCGGATTCTCAAGACACTTGAGATGGATGAAGAGTATGAGGGAAATGTTGAGGCTACTGGAGAGGACTATTCTGTGGAGCCAGCTGATTCCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAAGACCACAACTGGAAACCGTGTCTTTGGTGCTCTGAAGGGTGCACTGGATGGTGGTTCGGATATTCCTCACAGTGATAAGAGGTTTGCTGGTTTTGATAAGGAAAAGCAGGAGCTTGATGCTGAGGGAATCGAAGCTGATGGACTTGAAGAGCTTTACAAGAAGGTTCATGCTGCCATCCGTGCAGACCCGACCATTAAGAAATCTGAGAAGAAGCCTGGTTGTGTC 1020 0.4324 MITGYGMHGYGDEALDIFSRMCQAQLVPNEISFVGLLSACSHAGMALKLITGILKLSAGISTEHMIPSKVTEYGSNGRTVPSFFPWLDYATKYPLSELFKARPPLWNTALQSESFDDDELEHFEDVIKETDKEPVTVSDKREEPVTVSDKSDEPIWEYLRDEIELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDFLEWLIITLIGRQNPTYATGLLLARRILKTLEMDEEYEGNVEATGEDYSVEPADSRRPFRALLDVGLVKTTTGNRVFGALKGALDGGSDIPHSDKRFAGFDKEKQELDAEGIEADGLEELYKKVHAAIRADPTIKKSEKKPGCV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4919 340 PANTHER RIBOSOMAL PROTEIN L5-RELATED 212 306 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa4g4919 340 PANTHER RIBOSOMAL PROTEIN L5-RELATED 307 337 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa4g4919 340 PANTHER PROTEIN L5, PUTATIVE-RELATED 212 306 - -
Psa4g4919 340 PANTHER PROTEIN L5, PUTATIVE-RELATED 307 337 - -
Psa4g4919 340 Pfam Ribosomal L18 C-terminal region 313 337 IPR025607 -
Psa4g4919 340 Gene3D Tetratricopeptide repeat domain 1 57 IPR011990 GO:0005515
Psa4g4919 340 TIGRFAM PPR: pentatricopeptide repeat domain 1 30 IPR002885 -
Psa4g4919 340 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 212 289 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa4g4919 340 Gene3D - 208 306 - -
Psa4g4919 340 Gene3D - 307 339 - -
Psa4g4919 340 SUPERFAMILY Translational machinery components 209 330 - -
Psa4g4919 340 PRINTS Ribosomal protein L5 signature 258 277 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa4g4919 340 PRINTS Ribosomal protein L5 signature 278 297 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4919 Psa-Chr4 425524594 425526542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4919 212 335 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 63.125 5.11e-62 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4919 K02932 - gmx:100805868 215.698