Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4892 ATGATTTTTTATATAATTATTCAAATGCAGACATTTCAACAGCAGCTGCTAAGAAAGCCCGAAGGAAATGAAGCATTTTTAGCCTATCAAGCAGGGCGTCAAGGTGTATTTGGGAGTAACAATTTCCAACAACCCAATGCTATGCAACTGCCCCAGCAGTCTCGAAAATTCACCGATTTAGCTCAGCTACATGGTTCCAATCAAGATGCTCAGCTCAGAGGTCAAAATAGCGAGCAGCAGCAAATGCTAAACCCTGTCCACCAAGCATACCTTCAATATGCTTTCCAGGCTGCGCAACAAAAGCCTACTTTGGGAATTCATCCGCAACAGCATGCTAAGATGGGAATGAATTCATCTGAACACAATGTCCGTGGAGAAAAGCAGATGGAGCAAGGACAACAGATAAGATCCATTCAAACACCAGAAGCACAACATGGCATCCAAAATGTTATGAACAGCCAGATTGCAGTAGCTGCTCAATTGCAAGCCATGCAGGCATGGGCACGTGAGAATAATATTGATTTATCACATCCTACAAATGCACATTTAATGGCAAAGCTCATTCCACTGATGCAGTCGAGGATGGTCCTACCACCAAAGACCAGTTCTTCGAAAGCCAGGCAGACAGTTCCTCCCAGCCATCTCGGTTCAACGGCAAATGCTGGTACAGCTGGTCAGTCCAGTGACATGGTCATGCAGCAATTCAATGTTCATGGTAAAGAGTCTCAAGCTCCTCTGAGGCAACAAGTAAAAGCTGGAAATGGAATGCCCTCTTATCATTCTCAGCAATCCTCTGCAACCATGAACATAGGTGCCGACCATCATTTGAATGCAAAAGGTTCATCTTCTGGTGCAGAACCTCCTCAAACGCAGTACACCAGGCAGTTAAACCAAACTACGACACAGACTGGAGGCCCAACAAAAGAAGGGGGTTCGGGAAATTATGCTAAATCTCAAGGGGCCCCAGCTCAGATGCCTGAGCGACAAAATGGATTTACAAAACAACAGCTACATGTTCTTAAAGCACAGATACTAGCATTTAGGCGGTTAAAGAAAGGAGAAGGTACTCTGCCTCAAGAACTTCTTCAAGCTATCACTCCACCACCTCTTGAGTTGCAGGCAAAACAACCAAACCATCCTGCAGGAGGACAAAATCAAGTCAAATCTGCTGGAAATATTGTGCCAGAACAACCACGGCATGTTGAGGTCAATGAATCACAATCTAATCCCGCTGTTAATGGACCCAGTTCTGTAAAGCAGGAATCCTTTTCAAAAGATGAGAAATCTGCTCTGCCAGCAGTTCATATTCAAGCTGTTGTGCCGTCTGTATCAAAAGAATCTGCTTCAACTTCATCTGCTGGAAAGGAAGAGCAGAAACCAATTGGATCCTCTATTAAGCCAAAGCAGGACAGTGAACATGGAAATAACAGTACTCCTGTTAGAAATGAGTTGGCATTAGATAGGGGAAAGGCAATTGCACCGCAAACCTCTGTATCCGATACAATGCAAATTACAAAACCGGGACAGGCAAACACTGTTTCTCAGCCAAAGGATGTGGGACCAACCAGAAAGTATCATGGACCCCTGTTTGATTTTCCGTTCTTCACTAGGAAACATGACTCTTTTGGGTCATCTATGATGGTAAACAACAGCAATAATTTATCACTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGCGTAGAAGTACTTAGCAAGAAGCGAACAGAAAATTTGAAGAAGATTGAAGGCTTACTGGCTGTTAACTTAGAGAGGAAACGAATTAGGCCTGATCTTGTGTTGAGACTGCAAATTGAAGAGAAAAAGCTCCGCCTTTTAGATCTGCAGGCTCGTTTGAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCTATGCCAGATAGGCCATATCGTAAGTTTGTTAGGTTGTGTGAACGCCAGCGTGTGGAACTTGTTAGGCAAGTGCAGGCGTCTCAAAAAGCTGCTAGGGAGAAGCAACTGAAATCTATATTTCTATGGCGGAAGAAACTTCTTGAGGCACACTGGGCAATTCGTGATGCCCGTACTGCCCGTAACAGGGGTGTGGCCAAATATCATGAGAGGATGTTGCGGGAATTCTCAAAACATAAAGATGACGATAGAAATAGAAGGATGGAAGCCCTAAAGAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAACAGCAGACTAGCATTCCGGGTGATGCTGCAGAGAGATATGAAGTTCTTTCATCTTTCTTATCCCAGACTGAGGAGTATCTACATAAATTAGGAAGTAAGATAACAGCTGCCAAAAATCAACAAGAAGTGGAAGAGGCAGCAAAAGCAGCTGCTGGTGCTGCACGATTGCAGGGTCTATCTGAAGAAGAAGTCAGAGCTGCTGCTGCTTGTGCAGGAGAGGAAGTGATGATCAGGAATCGTTTTCTGGAGATGAATGCTCCTAGAGACAGTTCATCTGTCAACAAGTATTACAACCTCGCACATGCGGTGAGTGAAATGGTCATAAGACAACCATCCCTCTTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTGGATTGCAATGGATGCTTTCTTTGTACAACAACAAATTAAATGGAATTTTAGCTGATGAGATGGGTCTTGGTAAAACAGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTCAAAGGAAACTATGGTCCACATCTTATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTATACAAGTGGTTACCATCTGTGTCATGCATTTTTTATGCTGGAGGGAAAGATTATCGATCAAAATTATTTCATCAAGTTTCTGCTCTGAAGTTTAATGTCTTGGTGACTACTTATGAGTTCATCATGTATGACCGGGCAAAACTTTCAAAAATTGATTGGAAGTATATTGTGATTGATGAAGCACAGAGAATGAAGGATAGAGATTCAGTTTTAGCACGTGACCTTGATAGGTATCGTTGTCAAAGACGTCTGCTTTTGACAGGCACACCGTTGCAGAATGATTTGAAGGAACTCTGGTCACTTCTAAATTTACTTCTCCCTGAGGTTTTTGATAATAAGAAAGCCTTTCATGATTGGTTCTCAAAACCATTTCAAAAAGAAGGCCCTACTCAAAATGCAGAGGACGATTGGCTCGAGACAGAGAAAAAAGTCATCACAATCCATCGACTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGCCGTGTTGAAGATGTTGAAGGCTCACTACCACCAAAGGACTCCATAGTTTTACGATGTAAAATGTCATCTGTCCAGAGTGCTATTTACGACTGGGTCAAATCGACTGGTACTCTTCGTCTTGATCCTGAGGATGAGGAACGTAAGCTTCAGAGGAATCCTAACTACCAGGTGAAACAATATAAAACTTTAAACAACAGATGCATGGAGCTTCGGAAAACATGCAATCATCCGTTGCTTAATTATCCATTCTTCAGTGACTTATCTAAAGAGTTCATTGTAAAATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACCGGACACCGAGTTCTACTTTTCAGTACCATGACAAAACTTCTTGACATCTTGGAAGAATACCTGCAGTGGCGAAGACTCGTGTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATTAGCTATAAATGACTTCAATGGCCCTGATTCAGACTGTTTCATCTTCTTGCTTAGCATTCGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTTATTTATGATCCTGATCCAAATCCTAAAAATGAGGAGCAGGCTGTTGCCAGAGCTCATCGTATTGGACAGAAAAGACCAGTCAAGGTTATCTACATGGAAGCAGTTGTCGACAAAATCCCTAGTCATCAGAAGGAAGATGAAATGAGAGGTGGAGGCACTGTTGATTTGGAGGATGAACTTGTAGGCAAGGATCGCTACATAGGATCTATTGAGGGCCTCATAAGAAACAATATTCAGCAATATAAGATAGACATGGCTGATGAGGTAATTAATGCTGGGCGTTTCGATCAAAGAACAACACATGAAGAAAGGCGTTTGACTTTGGAGACATTATTACACGATGAAGAGAGGTATCAAGAAACTGTCCATGATGTTCCGTCACTGCAGGAGGTAAATCGCATGATTGCTAGGAGTGACGAGGAAGTGGAACTGTTTGATCAAATGGATGATGAACTAGATTGGATTGAGGATATGACACGGTATGATCATGTGCCTAAATGGATTCGTGCCAATACAAAAGAAGTTAATACTGCTGTTGCTGCTTTATCAAAAAGACCATTAAAGAAAAGTTTATTGGGTGGTAGTGTTGCCGTGGATACAAGTGAACTTGGTTCAGAAAGAAAAAGAGGACGGCCCAAGAAACATACTAGTTATAAAGAACTGGAAGATGAAGATTTGGAATACTCTGAAGCAAGCTTTGAAGAAAGAAATGGGTCTGCAAACGAAGAAGGGGAGGTAGGAGATTTGGACGATGATGGGTATAGTGGAGCTGATGGAGCTCAACCCATCGATAAAGATCAGATGGAAGATAGTCTGTGTGATGGTGGATATGAATTTTCTCAATCTTTAGAAATTGCCCGAAATAATCAGGTGGTTCAAGAAGCTGGTTCCTCTGGATCGTCCTCTGACAGTAAAAAAGTGACACAGATAGTGTCACCATCAATTTCCTCTCAGAAATTTGGTTCCCTGTCAGCATTAGATGCCCGGCCAGGTTCCATTTCAAAAAGGATGACAGATGACTTAGAGGAAGGGGAAATTGCAATATCTGTTGATTCTCACATGGAGCATCAACAGTCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAACAAGTTTTGCAGAAACCAAAGATTAAACGCAAACGTAGTCTTCGTGTTCGACCCCGTCATCCCACTGAAAAACCTGAAGAAAAGTCTGGTAGTGAAATTATGCCTCGTTTGTCAGTCCAAGCAGACCGTAAATATCAAGCACAGCTGAGGACTGACCTAGAATCAAAATCACACATAGATTCAAATGCCAGCAGGAATGATCAAAACATTTCATTAAAAAATAAGCGAACTTTACCTTCAAGGCGGATTGCTAATACATCGAAATTACACGGCTCACCAAAGCCTACTCGTTTGAATACCATATCTGCTCCTTCAGAGGATGGTGGCGAACATTCCAGGGAAAGCTGGGAGGGGAAGCCTATCAATTCAAGTGGATCCTCTGCTCATGGCTCTAGGATGACAGAAATCATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGCCATCAAATTGTACCTCTATTAACAGATCTGTGGAAGAGGATTGAGAATTCTGGGTTAAGTGGTGGATCTGGGAATAACCTGTTGGATCTACGGAAGATTGATCAGCGGATTGATAAATTGGAGTATACTGGAGCCACGGATCTTGTATTTGATGTGCAATTCATGTTAAAGAGCGCAATGCATTATTACGGTTTCTCCCTTGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTCGATATATTGAAAATTGCATTTCCTGATACCGACTTCCGAGACGCAAGAAGTGCACTCTCTTTTGCCGGTCCAGTTTCTGCCTCAACCACTGTATCGTCTCCTAGGCCAGTAGCTGTTGGACAAGGCAAGAGGCACAAGCTGATGAACGAGGTGGAACCCGATTCACACCCTTCACAGAGACCACTGCAACGCGGATCAGCTTCTAGCGGAGAAAACAGTAGGATTAGAGTCCGTATGCCACCAAAGGAATCAAAAACCGGAAATGTTAGCGGCAGCAATATACGAGAGCAACCTCGACCACAGGATGATTCTCCACCACTACTTACTCATCCAGGCGAACTAGTCGTGTGCAAGAAAAGAAGAAACGAGAGGGAGAAATCAACGGTGAAGACTAGGACCGGTCCTGTTTCGCCGTCTATGAGAAGTCCTGCGGCAGGTTCAGTCCCCAAAGACAGATTAACTCAACAGACTCAAGGATGGGTTGGACAACCATCTCAACAACCAAATGGGTCAGTTGGGTGGGCTAATCCTGTAAAGAGGCTAAGAACAGATTCTGGGAAGAGGAGACCAAGTCATATGTGCTACCTTTCTTGTAGGTGGCTGAAACTATTGTATAGTAAATCCTTGGCTGAAAAATTGTGTCAAGTGGAGAAGAGACAAGTGATTGAAGCCTATTAA 6327 0.4285 MIFYIIIQMQTFQQQLLRKPEGNEAFLAYQAGRQGVFGSNNFQQPNAMQLPQQSRKFTDLAQLHGSNQDAQLRGQNSEQQQMLNPVHQAYLQYAFQAAQQKPTLGIHPQQHAKMGMNSSEHNVRGEKQMEQGQQIRSIQTPEAQHGIQNVMNSQIAVAAQLQAMQAWARENNIDLSHPTNAHLMAKLIPLMQSRMVLPPKTSSSKARQTVPPSHLGSTANAGTAGQSSDMVMQQFNVHGKESQAPLRQQVKAGNGMPSYHSQQSSATMNIGADHHLNAKGSSSGAEPPQTQYTRQLNQTTTQTGGPTKEGGSGNYAKSQGAPAQMPERQNGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLQAITPPPLELQAKQPNHPAGGQNQVKSAGNIVPEQPRHVEVNESQSNPAVNGPSSVKQESFSKDEKSALPAVHIQAVVPSVSKESASTSSAGKEEQKPIGSSIKPKQDSEHGNNSTPVRNELALDRGKAIAPQTSVSDTMQITKPGQANTVSQPKDVGPTRKYHGPLFDFPFFTRKHDSFGSSMMVNNSNNLSLAYDVKDLLFEEGVEVLSKKRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRVELVRQVQASQKAAREKQLKSIFLWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKHKDDDRNRRMEALKNNDVDRYREMLLEQQTSIPGDAAERYEVLSSFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAAGAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVSEMVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYKWLPSVSCIFYAGGKDYRSKLFHQVSALKFNVLVTTYEFIMYDRAKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGPTQNAEDDWLETEKKVITIHRLHQILEPFMLRRRVEDVEGSLPPKDSIVLRCKMSSVQSAIYDWVKSTGTLRLDPEDEERKLQRNPNYQVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRELAINDFNGPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKRPVKVIYMEAVVDKIPSHQKEDEMRGGGTVDLEDELVGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSDEEVELFDQMDDELDWIEDMTRYDHVPKWIRANTKEVNTAVAALSKRPLKKSLLGGSVAVDTSELGSERKRGRPKKHTSYKELEDEDLEYSEASFEERNGSANEEGEVGDLDDDGYSGADGAQPIDKDQMEDSLCDGGYEFSQSLEIARNNQVVQEAGSSGSSSDSKKVTQIVSPSISSQKFGSLSALDARPGSISKRMTDDLEEGEIAISVDSHMEHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHPTEKPEEKSGSEIMPRLSVQADRKYQAQLRTDLESKSHIDSNASRNDQNISLKNKRTLPSRRIANTSKLHGSPKPTRLNTISAPSEDGGEHSRESWEGKPINSSGSSAHGSRMTEIIQRRCKNVISKLQRRIDKEGHQIVPLLTDLWKRIENSGLSGGSGNNLLDLRKIDQRIDKLEYTGATDLVFDVQFMLKSAMHYYGFSLEVRTEARKVHDLFFDILKIAFPDTDFRDARSALSFAGPVSASTTVSSPRPVAVGQGKRHKLMNEVEPDSHPSQRPLQRGSASSGENSRIRVRMPPKESKTGNVSGSNIREQPRPQDDSPPLLTHPGELVVCKKRRNEREKSTVKTRTGPVSPSMRSPAAGSVPKDRLTQQTQGWVGQPSQQPNGSVGWANPVKRLRTDSGKRRPSHMCYLSCRWLKLLYSKSLAEKLCQVEKRQVIEAY* 2109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4892 2108 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1186 1363 IPR001650 -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1933 2069 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 297 327 - -
Psa4g4892 2108 SMART bromo_6 1776 1891 IPR001487 GO:0005515
Psa4g4892 2108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1085 IPR027417 -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1708 1752 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 403 420 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 199 225 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1474 1527 - -
Psa4g4892 2108 PANTHER ATP-DEPENDENT HELICASE BRM 41 2010 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Psa4g4892 2108 Gene3D - 1095 1305 IPR027417 -
Psa4g4892 2108 SUPERFAMILY Bromodomain 1830 1892 IPR036427 GO:0005515
Psa4g4892 2108 CDD Bromodomain 1783 1886 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1968 1982 - -
Psa4g4892 2108 Pfam SNF2-related domain 859 1162 IPR000330 GO:0005524|GO:0140658
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1565 1598 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1693 1707 - -
Psa4g4892 2108 ProSiteProfiles QLQ domain profile. 331 367 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1476 1496 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 2032 2056 - -
Psa4g4892 2108 Coils Coil 606 630 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1632 1653 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1624 1778 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1907 1926 - -
Psa4g4892 2108 CDD SF2_C_SNF 1175 1306 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1942 1956 - -
Psa4g4892 2108 Pfam Helicase conserved C-terminal domain 1185 1296 IPR001650 -
Psa4g4892 2108 Pfam QLQ 332 365 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1997 2013 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 442 478 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 494 518 - -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1565 1597 - -
Psa4g4892 2108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1089 1426 IPR027417 -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 1764 1778 - -
Psa4g4892 2108 SMART helicmild6 1212 1296 IPR001650 -
Psa4g4892 2108 Gene3D - 847 1094 IPR038718 -
Psa4g4892 2108 SMART ultradead3 852 1040 IPR014001 -
Psa4g4892 2108 SMART QLQ_2 330 367 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa4g4892 2108 Gene3D - 1778 1901 IPR036427 GO:0005515
Psa4g4892 2108 MobiDBLite consensus disorder prediction 403 429 - -
Psa4g4892 2108 PANTHER SNF2/RAD54 HELICASE FAMILY 41 2010 - -
Psa4g4892 2108 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 868 1032 IPR014001 -
Psa4g4892 2108 MobiDBLite consensus disorder prediction 494 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4892 Psa-Chr4 423010689 423020905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4892 877 1321 RAD5 or RAD16-like Gene Family AT1G02670 26.104 5.53e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa4g4892 SNF2_N 3.9e-64 CL0023