Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4872 ATGTCCGGATCTATTAGCAGTCAGTACCTAACTGTTTTGCTTATGACAGCACCGTTGGTTCTTAGCGACGTTGGGATTGAGATAATTGATAAATTGATTTCGGTTCCGTTATGTTGGAATGACTTTAAAGCTGAAGGTGATGCTTCTAGTGTCAGTTACTTCCTAGCCGGTGCTGAAGTTACCGTTGGAACTATCACGGTTATAGGCTGCGGGACGAGCAGTTTACAGGGAGATGTAAAATTTGCTGAAGTTCTTGAAGGATGGGAGCTAAAGTTACGTGGACAGAAAACAGCGTCACAGTTACCGGGCCTCCACGAGATTCTTCTGGTCGGAAAGTTAGGATTAGGTGGAAATTCTTTGACAGGAGAGATTCTTTCGAGTACCTGCAATGAAGCCGGACATAAGTTGACATACATAGGGCTGGATAATAATCAGATGACAGGTTTGATACCTCCTGAATCAGGTTCTTGTAAGAAAGTGGCCTTGATGAGTTTGGTTGAGAATCAATTGACTGGTGCATTACCACCAGAACTTGGAAATCTTATCAGTCTTCAAGTCTTGATGAACAAGCTTAATGAACCAGCAGAAAAACCATATAACAAAGTCGTATCATGGTTTCACTTCAGTTCATACATCAGACCTGCCACGCCAGTTCAACAACAATATTTCAAAACCTGCAAGAAAAAACCAAAACAGCAAACACCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGATCACATATTTGAAGAATATGAAGAGCCTCCCGTCTTTGAAAAAAAGAGTATATTTGTGGTACAATCTAATGGGATAAATGAGCAGCGGGCACAATATGATAGTTGCTTAAGATGGAGGAAGTTACCAGTTGATGTACTTATTCCCTCTAAGTGGACTTGTATGGAGAATTTTTGGGATCAAAGCAGGTGTTCATGCACTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTTGGAGAATGAACAAGGAATTCAAGAAACAAAGACTTACAGCGGCAAGCCAGAGGCCAGCTCTGGAACGTGAAGATCTTGATGCTTTGACCAATGTTGCAGTACTTGGAGATGATACAAGTGACTCTGGCAGGACACCAGTCGTGACCACTACAAAACACCCTCCTCATAGACCTGGGTGCTCCTGTATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTTCATGCACCTGTAACGTGTGCTTGACAGTTAAACCTCAGTTTAAAACCCTGCTATGA 1263 0.426 MSGSISSQYLTVLLMTAPLVLSDVGIEIIDKLISVPLCWNDFKAEGDASSVSYFLAGAEVTVGTITVIGCGTSSLQGDVKFAEVLEGWELKLRGQKTASQLPGLHEILLVGKLGLGGNSLTGEILSSTCNEAGHKLTYIGLDNNQMTGLIPPESGSCKKVALMSLVENQLTGALPPELGNLISLQVLMNKLNEPAEKPYNKVVSWFHFSSYIRPATPVQQQYFKTCKKKPKQQTPEVKPSVVMIEDHIFEEYEEPPVFEKKSIFVVQSNGINEQRAQYDSCLRWRKLPVDVLIPSKWTCMENFWDQSRCSCTAPNELNPRELDNLWRMNKEFKKQRLTAASQRPALEREDLDALTNVAVLGDDTSDSGRTPVVTTTKHPPHRPGCSCIVCIQPPSGKGKHKPSCTCNVCLTVKPQFKTLL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4872 420 Gene3D Ribonuclease Inhibitor 129 204 IPR032675 -
Psa4g4872 420 SUPERFAMILY EPT/RTPC-like 2 87 IPR013792 GO:0003824
Psa4g4872 420 SUPERFAMILY L domain-like 101 192 - -
Psa4g4872 420 Pfam CW-type Zinc Finger 279 316 IPR011124 GO:0008270
Psa4g4872 420 ProSiteProfiles Zinc finger CW-type profile. 269 319 IPR011124 GO:0008270
Psa4g4872 420 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 234 420 - -
Psa4g4872 420 Gene3D - 274 326 - -
Psa4g4872 420 Pfam EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 42 97 IPR001986 GO:0016765
Psa4g4872 420 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 234 420 - -
Psa4g4872 420 Gene3D Enolpyruvate transferase domain 38 128 IPR036968 GO:0016765
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4872 Psa-Chr4 421499860 421502452 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4872 229 420 B3 DNA Binding Superfamily AT4G32010 52.850 8.22e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4872 - - gmx:100778833 314.309