Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4869 ATGGAGCTTCAGAAGCGTCCAGATCATAACCTACCGGAGAAGAAAGGCCAGAAAAGGAAACTGGAGGAGGAATCTCAACAGGACTCACAGATCTCTCTTCCTCCCACCGGAGACGCACGCGACGCACTTATATCCGACGTCAACCAACACGTTTCAATTCTCCTTTCTACTTTTTCATGGAACGATTCCGATAGAGCTTCTGCTAAGCGCGCCACTCACGCCCTCGCCGATCTTGCCAAAAACGAGGAAGTTGTGAATGTGATTGTTGAAGGAGGCGCCGTTCCGGCTTTGATTAAGCATCTTCAACCGCCTCCTTTGCCTGAACACGGCGCGCCGAAGCCGTTTGAGCATGAGGTCGAGAAAGGGAGCGCATTCGCACTTGGACTTCTTGCAGTCAAGCCAGAACATCAACAACTCATTGTTGACAACGGTGCTTTGAAGCATCTTGTTGATCTTTTGAAGAGGCATAATAATGGCTTAACATCACGTGCCATTAATAGTCTCATTCGGAGGGCTGCAGATGCCATCACTAACCTTGCTCATGAGAACAGCAGTATTAAAACCCGTGTTAGGACGGAAGGTGGGATTCCACCATTAGTTCATTTGCTTGAATTTGCGGATACAAAAGTGCAAAGAGCAGCTGCTGGTGCATTACGGACCCTCGCTTTTAAAAATGATGAAAATAAGAATCAGATTGTTGAATGCAATTCTCTTCCAACTCTGATTCTGATGCTTCGGTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATCGGAAATCTGGTCCACTCCTCCCCCAATATAAAGAAAGAAGTTATTCTTGCTGGAGCCTTACAACCCGTTATTGGATTACTTAGCTCTTGTTGCTCTGAAAGCCAGAGGGAAGCAGCGTTGTTACTTGGACAGTTTGCAGCCACTGATTCAGACTGTAAGGTTCACATTGTACAGAGAGGTGCTGTTCGACCTCTGATAGAGATGCTTCAGTCTCCTGATGTTCAACTCAGAGAAATGTCTGCTTTTGCATTGGGGAGATTGGCACAGGACACACATAACCAAGCTGGTATTGCACATACTGGTGGCTTAGTGCCATTGCTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAGCATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAACGAGGATAATGTGCCCGACTTTATTAGGGTAGGCGGAATTAAGAAACTCCAGGATGGAGAGTTCATTATTCAAGCAACTAAGGATTGTGTTTCTAAGACATTGAAAAGACTAGAAGAGAAGATTCATGGTCGTGTGCTGAACCATTTATTATATCTTATACGGGTTTCAGAAAAGGCATTCCAAAGACGAGTTGCTTTGGCTCTTGCCCATCTTTGTTCTGCAGACGACCAGAGAAAAATATTTATTGACCACAACGGACTGGAGTTGCTTATTGGGCTTCTTGGCTCATCATGCCCTAAGCAGCAACTTGATGGTGCCGTGGCTTTATGCAAGTTGGCCAACAAAGCTATGGCTCTGTCTCCTATTGATGCTGCTCCTCCATCCCCAACACCTCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTATCAGATGTTACATTTTTAGTTGAAGGTAAACGGTTTTATGCCCACAGAATCTGTTTACTCGCTTCTTCAGACGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATTGAGATACCAAATATTAGATGGGAGGTCTTTGAGCTGATGATGAGATTTATATATACTGGATCAGTTGATCTCACTGTTGAAATTGCTCAAGATCTCCTCCGAGCAGCTGATCAGTATCTTTTAGAAGGGCTTAAGAGACTATGTGAATACACAATTGCACAGGATGTATCACTGGAGAGTGTGTCAAATATGTATGAACTTTCGGAAGCCTTCAATGCTATATCATTGAGACACACATGCATCCTTTTTATCTTGGAGCACTTCGATAAATTAAGTGCAACACCAGGACACACTGATTTGATTCAGCGTACAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAAGGGGAACTCCAACATCCAGGCATAG 2112 0.4427 MELQKRPDHNLPEKKGQKRKLEEESQQDSQISLPPTGDARDALISDVNQHVSILLSTFSWNDSDRASAKRATHALADLAKNEEVVNVIVEGGAVPALIKHLQPPPLPEHGAPKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHNNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRTEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNSLPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVILAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHTGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVPDFIRVGGIKKLQDGEFIIQATKDCVSKTLKRLEEKIHGRVLNHLLYLIRVSEKAFQRRVALALAHLCSADDQRKIFIDHNGLELLIGLLGSSCPKQQLDGAVALCKLANKAMALSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDLTVEIAQDLLRAADQYLLEGLKRLCEYTIAQDVSLESVSNMYELSEAFNAISLRHTCILFILEHFDKLSATPGHTDLIQRTIPEIRNYFVKALTKGNSNIQA* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4869 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 194 229 IPR000225 GO:0005515
Psa4g4869 703 SUPERFAMILY ARM repeat 434 506 IPR016024 -
Psa4g4869 703 MobiDBLite consensus disorder prediction 1 35 - -
Psa4g4869 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 194 IPR000225 GO:0005515
Psa4g4869 703 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 700 - -
Psa4g4869 703 Pfam Armadillo/beta-catenin-like repeat 190 222 IPR000225 GO:0005515
Psa4g4869 703 Pfam Armadillo/beta-catenin-like repeat 225 264 IPR000225 GO:0005515
Psa4g4869 703 Pfam Armadillo/beta-catenin-like repeat 309 348 IPR000225 GO:0005515
Psa4g4869 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 145 IPR000225 GO:0005515
Psa4g4869 703 Gene3D Potassium Channel Kv1.1; Chain A 528 673 IPR011333 -
Psa4g4869 703 Gene3D - 269 515 IPR011989 -
Psa4g4869 703 SMART BTB_4 537 634 IPR000210 GO:0005515
Psa4g4869 703 CDD BTB_POZ_ARIA_plant 524 639 - -
Psa4g4869 703 SMART arm_5 225 265 IPR000225 GO:0005515
Psa4g4869 703 SMART arm_5 465 505 IPR000225 GO:0005515
Psa4g4869 703 SMART arm_5 267 307 IPR000225 GO:0005515
Psa4g4869 703 SMART arm_5 81 132 IPR000225 GO:0005515
Psa4g4869 703 SMART arm_5 133 181 IPR000225 GO:0005515
Psa4g4869 703 SMART arm_5 350 390 IPR000225 GO:0005515
Psa4g4869 703 SMART arm_5 309 349 IPR000225 GO:0005515
Psa4g4869 703 SMART arm_5 183 223 IPR000225 GO:0005515
Psa4g4869 703 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 700 IPR044282 -
Psa4g4869 703 SUPERFAMILY POZ domain 529 631 IPR011333 -
Psa4g4869 703 Gene3D - 32 164 IPR011989 -
Psa4g4869 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 361 403 IPR000225 GO:0005515
Psa4g4869 703 Gene3D - 165 268 IPR011989 -
Psa4g4869 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 362 IPR000225 GO:0005515
Psa4g4869 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 236 278 IPR000225 GO:0005515
Psa4g4869 703 MobiDBLite consensus disorder prediction 1 26 - -
Psa4g4869 703 Pfam BTB/POZ domain 530 632 IPR000210 GO:0005515
Psa4g4869 703 ProSiteProfiles BTB domain profile. 537 604 IPR000210 GO:0005515
Psa4g4869 703 SUPERFAMILY ARM repeat 48 409 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4869 Psa-Chr4 421211799 421220700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4869 196 478 U-box Gene Family AT3G46510 26.502 1.64e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Psa4g4869 BTB 1.2e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4869 - - gmx:100819832 1227.62