Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4866 ATGGAGCAAGCATTGATTGGTGCACTGAACTATGTATCTCGAAATCTTCCTCTTCCTCCTCAACTCTTCAACACCGTTTCTTCTATCTGTTATGGATCTGAACCTAAACCCCTACCTTGCGATTCCTCCGATGACGTGAGCAATTCTACACAAGACGAAGATTTATTGACTGAGCTTCAAGACGCACTGTCCAAACAACGCCCTAATTGTGATTCTAGTTCCAAATTAAACAAAGCAATCAAAATTCGTTCGTTAACTCGGATTCAGCACCGCTTAACTCAGCTTGAAGGTTTGCCTTCCAGATTGGGAGACGACCTACAGACAAGGTGCTTGCTTGAGCTTTATGGACTAAAGCTGGCGGAGTTGCAGGGGAAGGTTAGGATGGAAGTGAGCTCTGAATATTGGCTTAATGTTAAATGTGCATATCCCGACAAACAATTATTTGACTGGGGCATGATGCGGTTGCGGCGTCCTCCTTATGGTGTTGGAGATCCATTTTCCATTGATGCTGCTGATGATCAAATAAGGAAGAAGCGGGACACAGAGAGACTATCTAGATTAGAAGAGCAAGCAAAAAGTCACACAGAGACCAGAACAAGAAGATTTTTTGCAGAAATACTGAATGCTGTCCGTGAGTTCCAGTTACAAATCCAAAGTTCATTGAAGAGAAGAAAACAGAGGAATGATGCTGTTCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACTCGGGCAGAGAAATTGAGATTCCAAGCTTTAAAGGCTGATGATCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTGCTTGTAAATTTGGGAGCAGCGGTTCAACGTCAAAGAGACTCCAAACAATCAAATGGTATTGAACCATTGGAAAATTCAGAGGCTTGTTTACCACAATCAGATGCTTTGAAGAATGAAATTTCCAAGGAATCACCTCTTGATGAAGATGTGGATTTAATGGATTCTGATCATAATGATGACACTAGTGATTTACTTGAAGGCCAGAGGCAATACAATTCTGCCATACATTCCATTCAAGAAAAGGTAACTGAGCAACCATCTACTCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCATTGATAGCATATCTTTTAGAATACAAGGGTGTGACTGGCCCTTTTTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAGCGAGTTCTCAACATGGGCTCCTAGCATTTCAGCTGTTCTATACGATGGACGGATGGATGAGAGAAAAGCAATAAAGGAAGAACTCTCAAGGGAGGGCAAGTTTCATGTTCTGATAACACATTATGATCTTATAATGAGAGATAAAGCATTTCTGAAGAAAATCTATTGGAAATACTTGATTGTTGATGAAGGGCATCGATTGAAAAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTAGCTATCACATTGAACGAAGACTTCTGTTGACCGGTACCCCAATTCAGAACAGCCTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTCCCAAGCATTTTCAATTCAGTTCAGAATTTTGAGGACTGGTTTAATGCCCCCTTTGCAGATCGAGTTGATGTATCCTTAACAGATGAAGAACAGTTATTGATTATTCGCCGTCTGCATCAGGTAATAAGGCCATTCATACTCAGAAGGAAAAAAGCTGAGGTAGAAAAGTTTCTTCCTGGGAAATCACAGGTCATACTGAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTGACTGACGTGGGCAGAGTTGGGTTAGACAATGGTTGTGGAAAATCAAAGAGTCTACAGAACTTGACAATGCAACTCAGGAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAAACTATGATATATATAATCGAAAGGAGGAGATTGTCAGAGCATCAGGGAAATTTGAACTTCTTGACCGCTTGCTTCCAAAACTTCGTAGAGCTGGACATAGAGTCCTCCTTTTTTCACAAATGACTCGTCTCATGGATATTCTTGAAGTTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGACGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTTCTAAAGAAATTCAATGCTCCTGACTCTCCATACTTTATGTTTCTCTTGAGCACTCGTGCTGGAGGACTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCCGAGGATCGAGCCCATCGCATTGGACAAAAAAAGGAAGTTAGAGTTTTTGTGTTAGTCAGTGTGGGATCAGTAGAAGAGGTGATACTAGAACGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATCCAGGCAGGCCTTTTCAACACAACATCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTAGTAGCTCACTTGGAACAGACGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCCGATGAGGAATTTTGGCTGTTTGAGAGAATGGACGAAGATAGAAGACAACAGGAGAATTACAGATCTCGTCTCATGACAGAGCATGAACTTCCAGATTGGGTATACTCTGCAGTAAATAAGGATGATAAGGTCAAAGCTTTTGACAGCAGTGGTATTACTGGAAAGCGAAAAAGAAAAGAAGTGGTATATGCAGATACGTTAAGCGATCTTCAATGGATGAAGGCTGTGGAAAACGGACAAGATGTATCTAGGCTTTCAGCTAAAGGAAAAAGAAGAAACCACCTCCCTGCGGACAGCCATGCACAAACGAGTGATGACACTGCAGCAGAAGAAAGGTTGTTAGAGTTAAGCAACACCGTGGAAAATGAGAGATCAAGTGAAGATACTTCCAATGCGACCCCTGCCTCTAAGAGATTAAAACATGAAGAAATAAGTTCCCATAAACATGAAAAGGTGGACGTTGGAGGAAGTGGTTTGAAGGAGCATGTATTTTCTTGGAATGTTCACAGAAAGAAAAGGTCAAGCTATCTTAGCCAGGGTTCGTCATCTGATACCAGAGGGCAGAATGCAAATGGAAGGAGATCAAGCTAA 3237 0.4152 MEQALIGALNYVSRNLPLPPQLFNTVSSICYGSEPKPLPCDSSDDVSNSTQDEDLLTELQDALSKQRPNCDSSSKLNKAIKIRSLTRIQHRLTQLEGLPSRLGDDLQTRCLLELYGLKLAELQGKVRMEVSSEYWLNVKCAYPDKQLFDWGMMRLRRPPYGVGDPFSIDAADDQIRKKRDTERLSRLEEQAKSHTETRTRRFFAEILNAVREFQLQIQSSLKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKQSNGIEPLENSEACLPQSDALKNEISKESPLDEDVDLMDSDHNDDTSDLLEGQRQYNSAIHSIQEKVTEQPSTLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLLEYKGVTGPFLIVAPKAVLPNWVSEFSTWAPSISAVLYDGRMDERKAIKEELSREGKFHVLITHYDLIMRDKAFLKKIYWKYLIVDEGHRLKNHECALARTLDSSYHIERRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGCGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFERMDEDRRQQENYRSRLMTEHELPDWVYSAVNKDDKVKAFDSSGITGKRKRKEVVYADTLSDLQWMKAVENGQDVSRLSAKGKRRNHLPADSHAQTSDDTAAEERLLELSNTVENERSSEDTSNATPASKRLKHEEISSHKHEKVDVGGSGLKEHVFSWNVHRKKRSSYLSQGSSSDTRGQNANGRRSS* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4866 1078 PANTHER SNF2/RAD54 HELICASE FAMILY 3 1031 - -
Psa4g4866 1078 SMART ultradead3 373 566 IPR014001 -
Psa4g4866 1078 Pfam Helicase conserved C-terminal domain 688 801 IPR001650 -
Psa4g4866 1078 MobiDBLite consensus disorder prediction 1016 1039 - -
Psa4g4866 1078 Gene3D - 346 601 IPR038718 -
Psa4g4866 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 602 IPR027417 -
Psa4g4866 1078 MobiDBLite consensus disorder prediction 965 1040 - -
Psa4g4866 1078 MobiDBLite consensus disorder prediction 1053 1078 - -
Psa4g4866 1078 PANTHER ATP-DEPENDENT HELICASE BRM 3 1031 - -
Psa4g4866 1078 SMART SnAC_2 894 955 IPR029295 GO:0042393
Psa4g4866 1078 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 691 858 IPR001650 -
Psa4g4866 1078 MobiDBLite consensus disorder prediction 294 315 - -
Psa4g4866 1078 MobiDBLite consensus disorder prediction 966 1004 - -
Psa4g4866 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 856 IPR027417 -
Psa4g4866 1078 Pfam SNF2-related domain 380 668 IPR000330 GO:0005524|GO:0140658
Psa4g4866 1078 Gene3D - 608 906 IPR027417 -
Psa4g4866 1078 SMART helicmild6 717 801 IPR001650 -
Psa4g4866 1078 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 389 555 IPR014001 -
Psa4g4866 1078 CDD SF2_C_SNF 679 812 - -
Psa4g4866 1078 Pfam Snf2-ATP coupling, chromatin remodelling complex 890 955 IPR029295 GO:0042393
Psa4g4866 1078 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4866 Psa-Chr4 421126278 421134745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4866 684 829 RAD5 or RAD16-like Gene Family AT5G43530 37.333 5.79e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa4g4866 SNF2_N 5.1e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4866 - - gmx:100775993 1764.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4866 4 421126278 421134745 Psa4g4866 4 421126278 421134745 ECH
Psa3g2496 3 212245557 212257938 Psa4g4866 4 421126278 421134745 PCT