Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4858 ATGTATGGTCCTCCAACTCCTCCAACTCCCTATCACAATCACATTATGAATATCTATGACAATCAGCTGGCAAGTACAAGAACCGAAGATTATGAAATCATCTTCGAAGAAGAACAACCTTCAAGTGATGATCAACAGTCTAACCAACGTCCCAAAAAAAGAACGTATCGCCGCCATACACAGGAGCAGACTCAAGAAATGGAAGCTGCCTTTAGGGAGAATCCTCACCCAGATGACAAGCAAAGAAAAGAGATGGGTGCTCGGCTAGGGTTAGAGCCGCTGCAAATTAAGTTTTGGTTTCAAAACCGACGTACTCAGCTTAAGGTTCAAAATGAAAGGGAAGAGAATAGTGCTTTGAAGGCAGAGATTGAAAAACTTCGAAGTCACATATATAGGTACAAAGAAGCTATAGGGAATACTGCATGCAACGTATGTGGAAGCACAGCTACCATTGGTGAAATGTCCCGTGAGGAGCAGCAACTGAAGTTGGAGAATGCTCTCTTCAGAAAAGAGCTTGAAAAGTTTGCGGGCGGGGACGAGACATCGACGAATCCTACTGATACTCATACCATCTTATCATCATCAAACAACAGCAGTCAAGCGCCTTCGCGCTCTTTCAATGTCCGAGTTGTTGGTGGGACTAGTAACTATAATGGAGCACAAAATGGAATGGTAGGAGAAGCATATACTTGTGGTAATGGTGGTGAGCTTGTAAGTTCTTCAGTTCCAGTTAGAGAATATGTTGATGACAAACGTAGTATTATTGAGCTTGCTGTGTTAGGAATGGATGAACTAATGAGATTGGGTAAGACTAGTGGGCCCCCTCTATGGCTCCCCACCAACTACTACACTGAGATTCTAAATGGAGATGAATACATGAAGAATTTCCTTAGGGTTACTGGTCCTAATCCATTTGGGTTAAGGCCTGAAGGTTCTAAAGAGTCTGGTGTCATCATTATGAATCCTATTAATCTTGTTGATATCCTTATGGATGTGACTCGATGGTCAACTATGTTTTGCGGCATTGTTGCAAGAGCAGCAACAAACAAAGTACTCTCAACTGGAGTGGCAGGAAACTACAATGGAGCCTTGCAAGTGATGATAGCTGAATTCCAAGTTCCTTCGCCATTTGTTCCTATTCGCGAAAACTATTTCGTGCGATACTGTAAACTGCATCAAGACGGTATATGGGCCGTGGTTGATGTTTCATTGGATAATCTTCTACCTGCATCTAGCAGTAGTTCTGTCCCAAGACCCCAAAGAAGACCCTCTGGTTGTTTAATTCAAGAACTACCAAATGGTTACTCTAAGGTTACATGGATCGAACATGCGCTAGTGAACGATAACGCGGTGCAGAATTTTTATACACCTCTAATTAATTCTGGACTCGCGTTTGGCGCTAAACGCTGGGTGGCTACGTTAGAAAGACAATGCGAACGTCTCGCGTGCTCCATGTCCAACAACATACCAATTGCTGGAGACCTCGGAGTTATGATGAGTCCAGAGGGAAAGAAAAGTATGTTGAAGCTCGCGGAACGAATGGTGACTAGCTTTAGTACTAGTATTGGTGCTGCTTCAAATCATGCTTGGACAAACGTACACTCAGATGGATCAGAGCATGTGGTTAAGGTGATGACCAAAAAATACGTCGATGAATCGGGCCGTGGCAGCAGGTCCCCCGGTGTAGTCCTTAGTACTGCTACTTCTTTTTGGCTTCCCATTCCTCCGAGAAGGACTTTTGATTTTCTTCGCGACGAAAACACCAGATGTCAGTGGGATATTCTCTCGAACGGAGGTATAGTAACAGAAATGGCTCATATTGCAAATGGCCGTGATTCTGGAAGCGCTGTCTCTTTACTTCGTGTTAATAGTTCGAACACGATGCAGAGTAATATGGTGATACTGCAAGAGAGTTGCGCTGATATAACAGGTTCATATGTAGTATATGCACCTGTGGATATATCTTCCATGAATGTAGTATTGAATGGAGAAGATTCAAATACTGTTTCTCTACTTCCGTCCGGATTCGCTATTTTTCCGGACGGGATTTTACAGAATCGGGAACCGATTACGAATGTTGGATCGGGAGGTTCTCTTATCACAGTTGGATTTCAGATTTTAGTTGATTCTGTTCCACATGCAAGACTAGCTCTGGGTTCTGTTAGCACTGTTAACCATTTGATTAAGTCCACTGTGGAAAGGATTAAGGTTGCAGTGATGCCTAATGGCACGCTTAATGTCACCTAA 2247 0.4326 MYGPPTPPTPYHNHIMNIYDNQLASTRTEDYEIIFEEEQPSSDDQQSNQRPKKRTYRRHTQEQTQEMEAAFRENPHPDDKQRKEMGARLGLEPLQIKFWFQNRRTQLKVQNEREENSALKAEIEKLRSHIYRYKEAIGNTACNVCGSTATIGEMSREEQQLKLENALFRKELEKFAGGDETSTNPTDTHTILSSSNNSSQAPSRSFNVRVVGGTSNYNGAQNGMVGEAYTCGNGGELVSSSVPVREYVDDKRSIIELAVLGMDELMRLGKTSGPPLWLPTNYYTEILNGDEYMKNFLRVTGPNPFGLRPEGSKESGVIIMNPINLVDILMDVTRWSTMFCGIVARAATNKVLSTGVAGNYNGALQVMIAEFQVPSPFVPIRENYFVRYCKLHQDGIWAVVDVSLDNLLPASSSSSVPRPQRRPSGCLIQELPNGYSKVTWIEHALVNDNAVQNFYTPLINSGLAFGAKRWVATLERQCERLACSMSNNIPIAGDLGVMMSPEGKKSMLKLAERMVTSFSTSIGAASNHAWTNVHSDGSEHVVKVMTKKYVDESGRGSRSPGVVLSTATSFWLPIPPRRTFDFLRDENTRCQWDILSNGGIVTEMAHIANGRDSGSAVSLLRVNSSNTMQSNMVILQESCADITGSYVVYAPVDISSMNVVLNGEDSNTVSLLPSGFAIFPDGILQNREPITNVGSGGSLITVGFQILVDSVPHARLALGSVSTVNHLIKSTVERIKVAVMPNGTLNVT* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4858 748 ProSiteProfiles START domain profile. 247 483 IPR002913 GO:0008289
Psa4g4858 748 MobiDBLite consensus disorder prediction 179 204 - -
Psa4g4858 748 SMART HOX_1 52 114 IPR001356 GO:0003677
Psa4g4858 748 Coils Coil 102 129 - -
Psa4g4858 748 MobiDBLite consensus disorder prediction 34 79 - -
Psa4g4858 748 Gene3D - 315 484 IPR023393 -
Psa4g4858 748 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1-LIKE 38 741 - -
Psa4g4858 748 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Psa4g4858 748 MobiDBLite consensus disorder prediction 58 79 - -
Psa4g4858 748 SUPERFAMILY Bet v1-like 283 481 - -
Psa4g4858 748 Pfam START domain 275 480 IPR002913 GO:0008289
Psa4g4858 748 Gene3D - 38 125 - -
Psa4g4858 748 MobiDBLite consensus disorder prediction 175 204 - -
Psa4g4858 748 SUPERFAMILY Bet v1-like 501 735 - -
Psa4g4858 748 Pfam Homeodomain 53 108 IPR001356 GO:0003677
Psa4g4858 748 SMART START_1 256 480 IPR002913 GO:0008289
Psa4g4858 748 CDD START_ArGLABRA2_like 251 479 - -
Psa4g4858 748 SUPERFAMILY Homeodomain-like 39 110 IPR009057 -
Psa4g4858 748 CDD homeodomain 53 111 IPR001356 GO:0003677
Psa4g4858 748 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 38 741 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4858 Psa-Chr4 420785442 420790046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4858 8 739 Homeobox Transcription Factor Family AT4G04890 58.466 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa4g4858 START 5e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4858 K09338 - tcc:18597106 852.432