Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4830 ATGAGTTGTGTGAGAATATATAAAACGGTTCCGTCCATTTTACCACACAAAACTAGGGTTTTCAAGTTTCACGCATCCGGCAGTCATCAGCATCTCAAGGTAAGCATCACAATGGCTGTAGGGAAGAACAAACGGATTTCAAAGGGAAAGAAGGGTGGCAAGAAGAAGGCCGCCGATCCCTTTGCAAAGAAGGACTGGTATGATATCAAAGCTCCTTCTGTCTTCCAGGTCAAGAATGTCGGCAAAACCCTTGTATCCCGTACTCAGGGTACCAAGATTGCTTCCGATGGACTCAAACATCGTGTGTTTGAGGTATCATTGGCTGATCTTCAAGGAGATGAAGACAACGCTTTCAGGAAGATTAGATTGAGGGCTGAAGATGTTCAGGGGAAAAACCTCTTGACCAACTTCTGGGGTATGGATTTCACAACTGACAAGCTCAGGTCATTGGTTCGCAAATGGCAAACTCTTATTGAAGCCCATGTTGATGTGAAAACCACCGATAATTACACTCTTAGGATGTTTTGCATTGGGTTCACAAAGAGGAGAGCAAACCAAGTTAAGAGGACTTGTTATGCCCAATCAAGCCAAATCAGACAGATCCGTAGGAAGATGAGGGAGCAAATGGTCAACCAGGCAACATCCTGTGACCTAAAAGAGCTTGTCCGCAAATTTATCCCTGAGATGATTGGAAAGGAGATTGAGAAGGCCACATGTGGCATCTATCCTCTTCAGAATGTTTTCATTCGTAAAGTCAAGATCTTGAAAGCTCCCAAGTTTGATCTCGGGAAACTGATGGAGGTTCATGGTGATTACTCAGAAGATGTTGGTACCAAGGTAGAAAGACCTGCTGATGAGACAGTGGTTGAGGGAACCCCCGAAATTGTTGGAGCTTGA 897 0.4448 MSCVRIYKTVPSILPHKTRVFKFHASGSHQHLKVSITMAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMREQMVNQATSCDLKELVRKFIPEMIGKEIEKATCGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPADETVVEGTPEIVGA* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4830 298 ProSitePatterns Ribosomal protein S3Ae signature. 98 110 IPR018281 GO:0003735|GO:0005840|GO:0006412
Psa4g4830 298 Pfam Ribosomal S3Ae family 53 258 IPR001593 GO:0003735|GO:0005840|GO:0006412
Psa4g4830 298 PANTHER 40S RIBOSOMAL PROTEIN S3A 38 298 - -
Psa4g4830 298 PANTHER 40S RIBOSOMAL PROTEIN S3A 38 298 - -
Psa4g4830 298 Hamap 40S ribosomal protein S1 [RPS3A]. 38 295 IPR027500 GO:0003735|GO:0005840|GO:0006412
Psa4g4830 298 SMART Ribosomal_S3Ae_2 52 258 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4830 Psa-Chr4 419858802 419861373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4830 38 298 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 86.260 4.67e-162 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4830 K02984 - gmx:100805519 454.136