Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4796 ATGATTTTGATGAAGATGGTTCTTCAAAGTAGCTGGGTTTTCAGTTATCATGTTTTTGTTAGTTTCTTGTTGCTGATTAGTTCTGGTATAACCTATGGGACTGAAACTGATATCTTCTGTTTGCAAACTATAAAAAAATCGATCGATCCGAATAATTATTTGACATCTTCATGGAATTTCAACAATAAAACCGAAGGGTTTATCTGTAGATTTACTGGTGTTGAATGTTGGCATCCTGATGAGAATAGGGTCTTGAATCTCAAGTTGTCGAATATGGGACTCAAGGGTCAGTTTCCACGCGGCATTGTTAATTGCTCGAGCTTAACGGGATTAGATCTTTCGGTCAACGGTCTCTCAGGGACCATTCCAGTTGATATATCTTCGCTTCTAAACTACGTGACGTCTCTTGATTTATCTTCAAATGAGTTTTCTGGAGAGATACCTCTTAGTCTTGCGAATTGTACTTATCTGAATACCCTTAAACTTAATCAGAATCAACTTACTGGTCAAATTCCTCTACAATTAGGCACTCTCACGCGTCTTAAGGCATTTGATGTATCCGACAATTCTTTAACCGGGCAAGTTCCAAATTTCACTGACGGTAAAGTTACTGTAAATTATGCGAATAATCAAGGTCTTTGTGGATCTCTTTCATTGGGTGTTTGCAAGGTCAAGGCTTCCTCCAAGAGTAACACTGCAGTTATAGCGGGAGCTGCTGTTGGTGCGGTGACTCTTGCATTGTTAGGATTGGCCGTTGTAATGTTCTTCTTCATGCGCCACGGTACTTATAGGAGAAAGGAAGAAGATCCAGAAGGAAACAAATGGGCAAGAAGTATTAAAGGAACTAAAGGAATTAAGGTGTCTCTATTTGAGAAATCGATTTCGAAAATGAAATTGAGTGATCTCATGAAGGCTACTAACAACTTCAGTAATAGCAATATCATTGGGACGGGAAGAACGGGAACCGTTTACAAAGCTACTTTTGAAGACGGCACAGCATTCATGGTGAAAAGATTGCAGGAATCTCAACACTCCGAGAAAGAATTTATGTCTGAGATGGCGACACTTGGGATTGTCAAACATCGTAATCTGGTTCCTCTTTTAGGTTTTTGTATGGCCAAAAAAGAGAGGCTTTTGGTCTATAAAAACATGCCGAATGGAATGCTTCATGATCAACTACATCCTGCTGCTGGCGAGTGCACTCTCGACTGGCCTCTGAGACTCAAAATCGCAATCGGAGCAGCCAAAGGATTTGCGTGGCTTCATCATAGCTGCAACCCTCGTATCATCCACCGAAACATAAGTTCTAAGTGCATCTTGTTGGACGCAGAATTCGAGCCCAAAATTTCCGATTTTGGCCTTGCCAGATTGATGAACCCGCTCGATACACATTTGAGTACTTTCGTAAACGGTGAATTCGGCGATTTCGGTTACGTGGCTCCAGAGTATACAAAAACTTTGGTTGCTACGCCCAAAGGCGACGTGTTCAGCTTCGGGACCGTGCTTCTCGAGTTGGTAACCGGCGAAAGGCCTGCAAGTGTGGCTAAAGCGCCGGAAACTTTTAAAGGAAACCTCGTAGAATGGATTGCCGAGCTTACAACAAACTCGAAACTCCACGATGCCATTGACGAATCGCTAGTTGACAAAGGCGATGATAACGAGCTTTTCCAATTTCTAAAGGTTGCATGCAACTGTGTTTCAGAAACTCCAAAGCAGAGGCCAACCATGTTTGAAGTGTATCAATTCTTAAGAGCTATTGAAAATCAGAACAGAAATGTTTGTGTTTAA 1788 0.4167 MILMKMVLQSSWVFSYHVFVSFLLLISSGITYGTETDIFCLQTIKKSIDPNNYLTSSWNFNNKTEGFICRFTGVECWHPDENRVLNLKLSNMGLKGQFPRGIVNCSSLTGLDLSVNGLSGTIPVDISSLLNYVTSLDLSSNEFSGEIPLSLANCTYLNTLKLNQNQLTGQIPLQLGTLTRLKAFDVSDNSLTGQVPNFTDGKVTVNYANNQGLCGSLSLGVCKVKASSKSNTAVIAGAAVGAVTLALLGLAVVMFFFMRHGTYRRKEEDPEGNKWARSIKGTKGIKVSLFEKSISKMKLSDLMKATNNFSNSNIIGTGRTGTVYKATFEDGTAFMVKRLQESQHSEKEFMSEMATLGIVKHRNLVPLLGFCMAKKERLLVYKNMPNGMLHDQLHPAAGECTLDWPLRLKIAIGAAKGFAWLHHSCNPRIIHRNISSKCILLDAEFEPKISDFGLARLMNPLDTHLSTFVNGEFGDFGYVAPEYTKTLVATPKGDVFSFGTVLLELVTGERPASVAKAPETFKGNLVEWIAELTTNSKLHDAIDESLVDKGDDNELFQFLKVACNCVSETPKQRPTMFEVYQFLRAIENQNRNVCV* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4796 595 PANTHER LRR RECEPTOR-LIKE KINASE 10 588 - -
Psa4g4796 595 ProSiteProfiles Protein kinase domain profile. 309 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa4g4796 595 Gene3D Ribonuclease Inhibitor 35 224 IPR032675 -
Psa4g4796 595 Pfam Protein tyrosine and serine/threonine kinase 312 583 IPR001245 GO:0004672|GO:0006468
Psa4g4796 595 Gene3D Phosphorylase Kinase; domain 1 270 382 - -
Psa4g4796 595 PANTHER RECEPTOR-LIKE PROTEIN 55 10 588 - -
Psa4g4796 595 SUPERFAMILY Protein kinase-like (PK-like) 287 583 IPR011009 -
Psa4g4796 595 SUPERFAMILY L domain-like 35 202 - -
Psa4g4796 595 Gene3D Transferase(Phosphotransferase) domain 1 384 594 - -
Psa4g4796 595 Pfam Leucine rich repeat N-terminal domain 36 77 IPR013210 -
Psa4g4796 595 CDD STKc_IRAK 315 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4796 Psa-Chr4 418884396 418886929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4796 34 590 Receptor kinase-like Gene Family AT1G27190 46.454 1.67e-174 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Psa4g4796 PK_Tyr_Ser-Thr 6.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4796 - - gmx:100801294 855.129