Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4789 ATGCATTCTTCATCTGAAGATGAACAAGAACATAGTTTTGTCCAACGTGTAATAACAAAGAAAACTGTGAACGAGATTAGATTTCAAACATGTTCCTCTCATTCTAACAAGAAAATCAATAAGAAGACACATGAAGATGGAGAAAACTACAATGTTGATGGTGAATGTGGTTTGAATAATAAGAATGAGAGAGATAAACAAGTGGAGATTGTTCATCAAAAGTTTCGCGGTGTTCGAAGACGGCCGTGGGGGAGATGGGCGGCGGAGATTCGCGATCCTCGGCTCGGAAGGAGAAGATGGTTAGGAACATATGATACTGCTGAAGAAGCTGCTTTGGTTTATGATAAGGCTGCAATTGAGTATAGAGGTGCTGATGCTGTTACAAATATTATCGAACCGCCGCAGAAACATCATCAACAACAGAAACAACAAAAGAGAACATCGAAAAAAGTTGATAAGGATTGTAATGGTAGTTCATCTTCTTCATGTGTTACTGAATCTTCTTGGAGTGAAAGGAAAAGTGTGCAAGAATGGATTAGAGAGATAACCGGAGAAGAATATTTAGACGAGTCATTTGGTAAGGCTGTAAATTGTGGTCCATATGAAGCTATGACATCAGTATTTCAGAAGTCTATCATGAAACTATATGTATATCAGAGGTTGCATTGGTTTTGGTCATGA 681 0.3833 MHSSSEDEQEHSFVQRVITKKTVNEIRFQTCSSHSNKKINKKTHEDGENYNVDGECGLNNKNERDKQVEIVHQKFRGVRRRPWGRWAAEIRDPRLGRRRWLGTYDTAEEAALVYDKAAIEYRGADAVTNIIEPPQKHHQQQKQQKRTSKKVDKDCNGSSSSSCVTESSWSERKSVQEWIREITGEEYLDESFGKAVNCGPYEAMTSVFQKSIMKLYVYQRLHWFWS* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4789 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 3 184 - -
Psa4g4789 226 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Psa4g4789 226 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 184 - -
Psa4g4789 226 CDD AP2 73 129 IPR001471 GO:0003700|GO:0006355
Psa4g4789 226 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Psa4g4789 226 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Psa4g4789 226 SUPERFAMILY DNA-binding domain 74 130 IPR016177 GO:0003677
Psa4g4789 226 MobiDBLite consensus disorder prediction 133 159 - -
Psa4g4789 226 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Psa4g4789 226 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Psa4g4789 226 Pfam AP2 domain 74 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4789 Psa-Chr4 418820198 418821827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4789 4 189 AP2-EREBP Transcription Factor Family AT4G27950 37.245 3.52e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa4g4789 AP2 3.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4789 - - mtr:MTR_8g010340 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4789 4 418820198 418821827 Psa4g4789 4 418820198 418821827 ECH
Psa4g4789 4 418820198 418821827 Psa3g3652 3 311086886 311089427 PCT