Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4788 ATGTCGTTTGTCTTCTCATTCCATTTTCTAACTTTTTTCATGAATGTGAAACCTGTTTTCCTTCATTTGCTGCTGTTAGCAGTACTTTTACTGTCATGGTTGTGGAAGAAACTGATAACTGTTGAGTCCATACACAATTCCAGAGAGAGAATAACAAATAGCTTCTTCACAAAGAATTTTTTTTGTTCTCTTTCTGTTTCTGCTTTCAATATTTTGCTATGTTCTTCTGATTACTTGAGTTGGTCTAGATATGGTTTTCCAAAAGAAAAGCTTGTGACCCTTTTGGATTTGGCGCTGAATACAGTTACTTGGGGTGTTATTTGTGTTTCTCTTCACAGAAAACTCTTGTGTCCAATGTCATTGTTCTTTAGAGCTTGGTCTACCGTTTACCTTTTTGTTTCATGTTATTGCTTTACTGTGGACATTGTTCTCTATGAAAAGCAAGATCCTTTGCCAATTCAGTACTTAGTTTCTGATGTTTTCTCCGTTTGTGTGGGTTTATTCATCTGTTACTTGTGTTTTTTGAAGAAAAATGAGGGTGGAATAGAAGATACCACTCTTCAACAACCTCTTTTCAATGGTGAAACAACCAAAGGGGATGACACTGTTACTCCTTACTCTAATGCTGGTATTTTCAGCATTCTTACTTTCTCTTGGATCACTCCATTGATTGCTACTGGAAAGAAGAAAACTCTAGATCTTGAGGATGTTCCTCAGCTTGACATAAGAGACAGTTTATTTGCAGCATTTCCATATTTTAGGGATAACCTTGATGCATACTGTGTTGATAACAACAATAGAGTGACCACAATTAAGCTAGTGAAGTCATTAGCATTCTCGGCATGGAAAGAGATTCTCTTGACAGCTATTTTTGCATTGGTAAATACATTTGCTTCTTATGTAGGTCCTTATCTTATAGATAATTTTGTTCAATATCTTAATGGACAAAGAAAATTTGAATATGAAGGACTAGTTTTGGTGTCTACATTTTTTGTGGCAAAGCTTGTAGAGTGCCTGACAAGGAGGCAATGGATTTTCAGGCTGCAGCAGGTTGGAATTAGAATCCAAGCACTTCTTGTAACAATCATCTATAATAAAACTTTGACACTTTCAAGTCAATCCAAACAAGGCCACACTAGCGGCGAGATAATCAATTTCATGACGGTTGATGCCGAAAGAGTTGGCGACTTCTGTTATCACCTGCACGATCTGTGGTTGGTGGTTCTACAAATTTTAGTAGCTTTGTTGGTTTTGTATAAAAACCTTGGCATTGCTTCGATTTCTGGGCTTGTTGCAATTATCATTGTAATGTTGGCAAATGTTCCTTTAGGGTCAATCCAAGAGAAGTTTCAAGACAAGTTGATGATGTCAAGAGATAAAAGAATGAAGGCCACATCTGAGATTTTAAGGAACATGAGGATTCTCAAACTTCAAGGATGGGAAATGAAGTTTCTTTCTAAGATTACTGACCTCAGAAAGACGGAACAAGATTCATTAAACAAGTTTCTATACACTATAGCTTTGATCATTTTTGTATTCTGGAGTGCACCGGCATTTGTTTCTGCGGTTACTTTTAGTACTTGTTTGGTTATAGGTGTCGCACTTGAATCAGGGAAGATCTTGTCTTCACTCGCAACGTTCCAGATCCTCCAAGAACCTATTTATAATCTTCCAGAAACAATTTCAATGATGGCACAATCTAAGGTTTCTCTTGGCAGGATTGCATCTTTTCTTTGTCACGACGACATAAAGTCAGATATTGTCGAGAAACTTCCAAAGGACAGTAATAGTTCTGATTTAGCAATTGAAGTAGTTGATGGAAATTTCACCTGGGATTTGTCTTCCTCAAATGCAGTATTGAAAAACATAAATCTTAAAGTTTTTCATGGAATGAAAGTTGCTATTTGTGGTAGTGTTGGCTCAGGAAAGTCTAGTTTACTTTCATGTATATTAGGGGAAGTGCCAAAGATGTCAGGGGTTTTGAAGGTTTGTGGGACAAAGGCTTATGTATCTCAATCACCATGGATACAAAGTTGCAAGATAGAGGATAATATACTGTTTGGGAAGGTTATGAAAAGGGAAAGATATGAAAAGGTTCTTGAAGCATGTTGCCTAAAGAAGGATCTAGAGATTTTGTCATTTGGAGATCAAACAATCATTGGGGAGAGGGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCGCGTGCTCTATACAAAGATGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTTTGGATGCTCATACAGGCTCTCATCTATTTAAGGAATGCTTGTTGGGATTTTTAAGTTCAAAGACGGTGATTTATGTCACACATCAAGTAGAGTTCTTACCTGCTGCTGACCTTATCTTGGTAGTGAAAGATGGAGAAATTACTGAATGTGGAAAGTATAATGATCTACTCGACTCCGGCACTGATTTTATGGAACTTGTTGGTGCTCATAGAGAAGCTTTGTCTGTACTAATTGATTCATCAAATGGAGATACGCATACAACAAAATCTGATAAAATAGAAGAGAAGAAGCAAGTACAAAATGATGGAACTGATAAAATCGAAGTACAAAATAGGGGAAGTGATGAAATGTTTGAGGCCAAAGGCCAACTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGATTTTGGGTGTATTGGAAATATATCACCATAGCATATGGAGGGGCTCTTGTTCCACTCATATTGATAGCTGAAATTTTGTTTCAACTTTTTCAAATTGGAAGCAACTATTGGATGGCTTCAGCAACTCCAATCTCAAAAGATGTTGATCCACCTGTTGGAGGAAGTACACTCCTAATTGTCTATGTTGGTTTGGCGATAGGAAGTTCTTTTTGTGTCCTGGCTAGAGCAACCCTTGTCGTAACAGCCGGTTATAAGACAGCTACTCTACTCTTTAACAAAATGCACCTTTGCATTTTCCATGCTCCAATGTCATTTTTTGATGCCACTCCTAGTGGAAGAATCCTTAATAGGGCTTCTACTGACCAAAGTGCAGTGGATATAAACATTCCTTTTCAAATTGCACTAGTTGCTTGCTCTATAATCCATCTCCTTGGAATCATATCAGTGATGTCACAGGTTGCATGGCAGGTTTTTATTGTCTTTATTCCTATGACAGTAATCAGCATATGCTATCAGAAATATTATATTCCATCAGGCCGGGAACTATCTCGTTTACTCGGAGTATGCAAAGCTCCTGTCATTCAGCACTTAGCCGAAACAATTTCAGGTACATCAACCATCAGGAGCTTTGATCAGGTGTCAAGATTTCAACAAACAAATATGAAACTGATGGACGGGTATTCACGTCCCAAGTTCAATAATTTCGGTGCTATGGAATGGCTGTGTTTTCGCTTAGATATGTTGTCCTCTATCACATTTTCCTTCTGCTTGTTATTCTTGATATCTTCTCCACAAGGAATCATAAATTCAAGTGTTGCTGGTTTAGTTGTAACATATGGCCTTAACCTAAACATTATACAAACATGGATGATATGGGAGCTTTGCAACTTAGAGACCAAAATTATATCAGTAGAAAGAATACTTCAGTATACTTGTATTCCCAGCGAGCCTCCTCTTGTTGTAGACGAAAATCGGCCACATGCTTCTTGGCCATTATATGGCACAGTTGATATTCACAACTTGCGGGTGCGATATGCTCCGCATATGCCACTTGTTTTACGCGGCGTTACATGCACGTTTGTTGGAGGACAGAAAACCGGAATCGTTGGGAGAACAGGAAGTGGTAAATCAACTCTCATACAAACACTTTTCAGAATTACAGATCCTATTGCTGGAAGAATTTTGATTGATGGTATCGACATATCTTCCATTGGACTACATGATTTGAGGTCGAGATTGAGCATTATTCCTCAAGATCCAACCATGTTTGAAGGTACTGTGAGGAGTAACTTGGATGCACTGGAAGAGCACACAGATGAACAAATATGGGAGGCACTAGATAAGTGTCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGTTAGACTCATCAGTGAGTGAGAATGGTGAGAATTGGAGTATGGGTGAAAGACAGTTGGTTTGTCTTGGTAGGGTGCTGCTTAAGAAGAGTAAAGTATTGGTACTAGATGAAGCTACTGCATCCGTTGACACGGCTACCGATAATCTGATACAGCAAACTCTTAAGCAACATTTTTCTGATTGCACTGTCATTACAATTGCACATAGAATAACTTCTGTTATTGACAGTGATATGGTTCTACTACTTAATCAAGGACTAATTGAGGAATATGATTCCCCAACAAGATTGCTAGAGAACAAGTTATCGTCTTTTGCTCAACTTGTTGCTGAGTATACCACAAGGTCCAACTCCAGTTTAGCAGATAAATCACAAAACAAAGTCTCAACACTGATATGA 4458 0.3789 MSFVFSFHFLTFFMNVKPVFLHLLLLAVLLLSWLWKKLITVESIHNSRERITNSFFTKNFFCSLSVSAFNILLCSSDYLSWSRYGFPKEKLVTLLDLALNTVTWGVICVSLHRKLLCPMSLFFRAWSTVYLFVSCYCFTVDIVLYEKQDPLPIQYLVSDVFSVCVGLFICYLCFLKKNEGGIEDTTLQQPLFNGETTKGDDTVTPYSNAGIFSILTFSWITPLIATGKKKTLDLEDVPQLDIRDSLFAAFPYFRDNLDAYCVDNNNRVTTIKLVKSLAFSAWKEILLTAIFALVNTFASYVGPYLIDNFVQYLNGQRKFEYEGLVLVSTFFVAKLVECLTRRQWIFRLQQVGIRIQALLVTIIYNKTLTLSSQSKQGHTSGEIINFMTVDAERVGDFCYHLHDLWLVVLQILVALLVLYKNLGIASISGLVAIIIVMLANVPLGSIQEKFQDKLMMSRDKRMKATSEILRNMRILKLQGWEMKFLSKITDLRKTEQDSLNKFLYTIALIIFVFWSAPAFVSAVTFSTCLVIGVALESGKILSSLATFQILQEPIYNLPETISMMAQSKVSLGRIASFLCHDDIKSDIVEKLPKDSNSSDLAIEVVDGNFTWDLSSSNAVLKNINLKVFHGMKVAICGSVGSGKSSLLSCILGEVPKMSGVLKVCGTKAYVSQSPWIQSCKIEDNILFGKVMKRERYEKVLEACCLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYKDDADIYLFDDPFSALDAHTGSHLFKECLLGFLSSKTVIYVTHQVEFLPAADLILVVKDGEITECGKYNDLLDSGTDFMELVGAHREALSVLIDSSNGDTHTTKSDKIEEKKQVQNDGTDKIEVQNRGSDEMFEAKGQLVQEEEREKGKVGFWVYWKYITIAYGGALVPLILIAEILFQLFQIGSNYWMASATPISKDVDPPVGGSTLLIVYVGLAIGSSFCVLARATLVVTAGYKTATLLFNKMHLCIFHAPMSFFDATPSGRILNRASTDQSAVDINIPFQIALVACSIIHLLGIISVMSQVAWQVFIVFIPMTVISICYQKYYIPSGRELSRLLGVCKAPVIQHLAETISGTSTIRSFDQVSRFQQTNMKLMDGYSRPKFNNFGAMEWLCFRLDMLSSITFSFCLLFLISSPQGIINSSVAGLVVTYGLNLNIIQTWMIWELCNLETKIISVERILQYTCIPSEPPLVVDENRPHASWPLYGTVDIHNLRVRYAPHMPLVLRGVTCTFVGGQKTGIVGRTGSGKSTLIQTLFRITDPIAGRILIDGIDISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDALEEHTDEQIWEALDKCQLGDEVRKKEGKLDSSVSENGENWSMGERQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLKQHFSDCTVITIAHRITSVIDSDMVLLLNQGLIEEYDSPTRLLENKLSSFAQLVAEYTTRSNSSLADKSQNKVSTLI* 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4788 1485 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1231 1463 IPR003439 GO:0005524
Psa4g4788 1485 ProSitePatterns ABC transporters family signature. 727 741 IPR017871 GO:0005524
Psa4g4788 1485 Gene3D - 578 847 IPR027417 -
Psa4g4788 1485 SUPERFAMILY ABC transporter transmembrane region 910 1211 IPR036640 GO:0005524|GO:0016021
Psa4g4788 1485 Gene3D - 1212 1465 IPR027417 -
Psa4g4788 1485 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 94 1474 - -
Psa4g4788 1485 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 94 1474 - -
Psa4g4788 1485 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 286 566 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g4788 1485 CDD ABC_6TM_ABCC_D2 910 1204 IPR044726 GO:0140359
Psa4g4788 1485 Gene3D ABC transporter type 1, transmembrane domain 263 577 IPR036640 GO:0005524|GO:0016021
Psa4g4788 1485 Gene3D ABC transporter type 1, transmembrane domain 874 1210 IPR036640 GO:0005524|GO:0016021
Psa4g4788 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 825 IPR027417 -
Psa4g4788 1485 CDD ABC_6TM_ABCC_D1 287 574 IPR044746 GO:0140359
Psa4g4788 1485 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 912 1192 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g4788 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1218 1454 IPR027417 -
Psa4g4788 1485 SUPERFAMILY ABC transporter transmembrane region 276 582 IPR036640 GO:0005524|GO:0016021
Psa4g4788 1485 CDD ABCC_MRP_domain2 1227 1447 - -
Psa4g4788 1485 Pfam ABC transporter transmembrane region 286 553 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g4788 1485 Pfam ABC transporter transmembrane region 913 1154 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa4g4788 1485 SMART AAA_5 1255 1440 IPR003593 -
Psa4g4788 1485 SMART AAA_5 629 803 IPR003593 -
Psa4g4788 1485 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 602 826 IPR003439 GO:0005524
Psa4g4788 1485 Pfam ABC transporter 620 755 IPR003439 GO:0005524
Psa4g4788 1485 Pfam ABC transporter 1246 1394 IPR003439 GO:0005524
Psa4g4788 1485 CDD ABCC_MRP_domain1 602 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4788 Psa-Chr4 418795665 418801528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4788 602 848 Calmodulin-binding Proteins AT2G36910 30.189 2.08e-23 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4788 - K05666 gmx:100775358 2140.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4788 4 418795665 418801528 Psa4g4788 4 418795665 418801528 ECH