Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4786 ATGGATGAAGATCAAGAGATGGAGAAATTCGGGATGGAGAATGATTTTGAAGGTGGTAGATGGGAAGGTGGCGAGTTCTACTACCGAAAGCGTAAAGAGAAACGGACTCAAACCAAAGACGATGTACTCTATGGAGTTTTTGCTGATTCTGAGGATGACGACGATGATGAGTATTCCAGTAGAAAGAGAAGGAAAGACCGTGATTTCTCGAAGAAACAGGACCTCACTAAACCGGTGAATTTCGTTTCTACTGGAACTTTGCCTAATCAGGATAAGGTTGATGAAATTCCAAAAGAAAAAGATGAGCAGGATAGTTATAATAGTGAAGATAGGCCTGGGTTAGGGTTAGGTTTAGGTCTTGGTTTTGGGTCTGCTAGTACGTCTGGGTCTGGTTTAGGTTTTAATTATGGTCGTGGTGCTGCGAATGGTTTTGATAGGAACGATGATGATGATGATAATGATAATGGTGATGATAAATTTTTGCCTACTGAGTTTGGGAAGAAGATTAAGGAGGGAGCAATGAGGAGGGAGAAGGAGAGATTGGAGAAGAAGAAGAAGGTGCAGAAGCAGGGGCTGGGTCTAGTTCATGAAGGATCTGTGGATGTTGGGAAATTTGAGAGTCATACGAAGGGGATCGGAATGAAGCTGCTGGAGAAGATGGGTTATAAAGGGGGTGGTCTTGGGAAGAATGAGCAGGGTATTTTAAATCCTATTGAGGCAAAATTGAGGGCTAAGAATTCTGGTCTTGGATTTAATGAATCGAAGGAGACTAAAACACCGTTGCCGGCTTTGCAGACGGAGAAGACATTGCCGGGAGGAGCCATGCAGCCTACAGTTGGAAGAACGAAAGAACGCTCCTGGTTAAAGCAGAAGAAGAAAAAGAAAGAAGAGGAAGTGTATGTAACTGCTGAGGAGTTGTTGGCGAGCAAGCAAGAAGAAGATTCAGAGGTTGTTCAGAAGATTTATGATATGAGGGGGCCACAGGTACGAGTGTATACAAATTTGTCTGATTTGAATGCTGAGGAGAAAGCAAAGGAAAAGGATGTCCCAATGCCTGAACTTCAGCATAACATAGCACTAATAGTTCGGTTGGCTGAGGCTGACATCCAAGAGATTGATAGAGATTTGAGGAAAGAGAGGGATATAGCACTTAGTTTGAAAAATGAAAAAGAAAAATTGGTAGCTGAGACAGCATTTCAAAAGAAACAGCTAAATAATTCTGAGAATATAATGAGTGTGCTGGACCGAGTTGGAGAAGAGAACACCTTAGGAACATTAACGTTGGATTCCCTTGCTCAATGCTTTAGAGACATGCTCAAAAGATATCCTGAGGACTATAAGTTGTATAACTTGTCATGCATTGCATGCTCATATGCTCTACCTTTGTTTATCAGAGTGTTCCAAGGATGGGACCCTCTTCGAAACCCATCACATGGTTTGGAGTTGGTATCACAGTGGAAGACATTGCTTCAAGGAGATGATTGTTTTGATATATGGGACACATCATCACCTTTTATTCACTTGGCTTCAGAGGTTGTATTGCCAGCTGTTAGAATATCTGGTATCAATACCTGGCATGCACGGGATCCGGAGCCGATGCTACGGTTTCTGGAGTCATGGGAAAAATTGCTACCTTCTTCAGTTCTTGCTACTATATTAGACAACATAGTCATGCCGAAACTATTGAGTGCAGTAAGTACTTGGGAACCACATCTTGAGACCATTCCTATCCACACATGGGTGCATCCGTGGCTGCCTCTGCTAGGGCACAAGCTGGAGGGTATCTACCAGACGATTCGTTTCAAATTGAGTACTGTTCTTGGTGCATGGCACCCAAGTGATGGTTCTGCATATGCTATATTGTCCCCTTGGAAGACTGTATTTGATTCTGATAGTTGGCAACAACTTATGCACCGTTTTATTGTACCAAAGCTGAAGAGTGTCTTGCAAGATGAATTCCAAGTGAACCCGGCAAGTCAGAACCTCGATCAATTTTATTGGGTAATGAATTGGGCTTCGGCCATTCCAATTCATATGATGGTTGACACGATGGAGACCTTCTTTGCCAAGTGGCTTGCAGTTTTGTATCATTGGTTGTGCTCAAATCCTAACTTTGATGAAGTTACAAAATGGTATTTGGGATGGAAAGAACTTTTTCCAAAAGAACTCTTGGCTAATGAAAGTATTCGATACAAGCTCAATTGCGGTCTTGATATGATGAACCAGGCTGTTGAAGGTATGAAAGTGGTACAACCTGGTTTGAAGGAGAAGATAAGCTATATTAGGGTAAGTGAGCAGAGGAAATTTGAGACTCAGCAGAAAGCAGCAGCCTCTGCTCAACAACAGGCTGCTGCAAGCTTGGGCTCTGCTGTCAATTCAGATGGTGTGAATGAAATGAGTGTGAAGGAACTCATTGAGGCCTATGCCCGGGATCATGGTTTACTGTTCAAACTTAAACCTGGTAGAATGCACAACGGTCATCAAATATATGGGTTTGGCAATGTCAGCATAATAATCGACTCTCTAAATCAAAAAGTCTACGCCCAAAATGAGGAAACTTGGTCTTTAGAAACTCTGGAACGATTGCTAGAGTTACATAATAAATCCCTCAGTAAAAGACGCTGA 2625 0.424 MDEDQEMEKFGMENDFEGGRWEGGEFYYRKRKEKRTQTKDDVLYGVFADSEDDDDDEYSSRKRRKDRDFSKKQDLTKPVNFVSTGTLPNQDKVDEIPKEKDEQDSYNSEDRPGLGLGLGLGFGSASTSGSGLGFNYGRGAANGFDRNDDDDDNDNGDDKFLPTEFGKKIKEGAMRREKERLEKKKKVQKQGLGLVHEGSVDVGKFESHTKGIGMKLLEKMGYKGGGLGKNEQGILNPIEAKLRAKNSGLGFNESKETKTPLPALQTEKTLPGGAMQPTVGRTKERSWLKQKKKKKEEEVYVTAEELLASKQEEDSEVVQKIYDMRGPQVRVYTNLSDLNAEEKAKEKDVPMPELQHNIALIVRLAEADIQEIDRDLRKERDIALSLKNEKEKLVAETAFQKKQLNNSENIMSVLDRVGEENTLGTLTLDSLAQCFRDMLKRYPEDYKLYNLSCIACSYALPLFIRVFQGWDPLRNPSHGLELVSQWKTLLQGDDCFDIWDTSSPFIHLASEVVLPAVRISGINTWHARDPEPMLRFLESWEKLLPSSVLATILDNIVMPKLLSAVSTWEPHLETIPIHTWVHPWLPLLGHKLEGIYQTIRFKLSTVLGAWHPSDGSAYAILSPWKTVFDSDSWQQLMHRFIVPKLKSVLQDEFQVNPASQNLDQFYWVMNWASAIPIHMMVDTMETFFAKWLAVLYHWLCSNPNFDEVTKWYLGWKELFPKELLANESIRYKLNCGLDMMNQAVEGMKVVQPGLKEKISYIRVSEQRKFETQQKAAASAQQQAAASLGSAVNSDGVNEMSVKELIEAYARDHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQKVYAQNEETWSLETLERLLELHNKSLSKRR* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4786 874 Pfam G-patch domain 209 250 IPR000467 GO:0003676
Psa4g4786 874 MobiDBLite consensus disorder prediction 92 108 - -
Psa4g4786 874 Coils Coil 369 396 - -
Psa4g4786 874 Pfam GC-rich sequence DNA-binding factor-like protein 428 695 IPR022783 -
Psa4g4786 874 MobiDBLite consensus disorder prediction 76 90 - -
Psa4g4786 874 MobiDBLite consensus disorder prediction 145 187 - -
Psa4g4786 874 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 7 862 IPR045211 GO:0000390
Psa4g4786 874 PIRSF TFIP11 1 869 IPR024933 -
Psa4g4786 874 SMART G-patch_5 207 252 IPR000467 GO:0003676
Psa4g4786 874 Coils Coil 293 313 - -
Psa4g4786 874 Pfam Tuftelin interacting protein N terminal 4 107 IPR022159 -
Psa4g4786 874 PANTHER TUFTELIN-INTERACTING PROTEIN 11 7 862 - -
Psa4g4786 874 ProSiteProfiles G-patch domain profile. 209 254 IPR000467 GO:0003676
Psa4g4786 874 MobiDBLite consensus disorder prediction 46 112 - -
Psa4g4786 874 MobiDBLite consensus disorder prediction 56 74 - -
Psa4g4786 874 MobiDBLite consensus disorder prediction 158 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4786 Psa-Chr4 418782316 418788745 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4786 195 268 C2H2 Transcription Factor Family AT5G26610 40.541 3.03e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4786 K13103 - gmx:100781621 1289.63