LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa4g4762	ATGGAGAAAACAAAGGCAAACGTCACCAGAAGTCGAAACCATGCCATTGAGAGGTTTTGGTTCTTGCCAGTAAAAGAATCACCAGTGCCTAGCCGTGTTGCAGCACAAACCAAAAGTACCCTAGCCACTGGTGATTCTTTTACTGCAAGAACCAAAACCTCTCAATGGCTGTTTTCACCTTCTGGTGACTTTGCCTTTGACAATCCTGCACCAAAAGGGTCAAAAGTTGAACTCACTGCCAAAGACGGGTTGGTGCTAACTTCTCCAAATGGTGTCGGGTTATGGAATACTACTGACGTACTCAGCGATGGAATTTCTCATGGTGTGTTAAATGACACTGGCAATTTTGTTCTTCAGGATGATGATTTCAAAAATCTCTGGGAGACTTTCAACTTTCCTAGGGACACATTGTTGCCGTCTCAAGTTCTTGAGAAAGGTGTAAAGCTTAGTTCAATGCTTAAGGAGACAAATTTCAGTAAGGGGAGGTTTGAGCTCCATTTACAAAATGATGGTGATCTTGTTATGTATTCTATTAATTTACCATCTAGTTATGTTAATGAAAACTATTATGAAAGTAGCATTGTTGGATCCAATACATCAAGTGCTGGAGCTCAATTGGTCTTTGACAGTTCAGGGAAGTTAGTTCAATGGAGTGTGATCATATTGTCGCTTTTGGCAGTGGTGTTTGTGGATACAATAGCATTTGCATTTTGGGAGATGATAAAGAGACCAACCTGTCAGTGTCCAAAAAGTTACTCACTGGTTGATCCTGATGATCTATATGGTAGCTGCAAGCCAGATTTCATACAAGAATATGAAGAAGATGAACTTAGTGAAAAAAGCAATGATCTCTATGACTTTGAGATTTTGTCTGAGACTGATTGGCCTCTATCAGATTATGTGCTTCAAAGGCCTTTTACTGAAGAACAGTGTAGGAAATCTTGTCTGGAAGATTGTTTGTGTTCTGTGGCTATTTTTAGGATAAGTGATAGTTGCTGGAAGAAGAAGTTACCACTCTCAAATGGGAAATATGATCCAACACTTACTAAGGCTAAGGTCTTCTTGAAAGTGAGAAAAGATAATACCTCCATTGCTTCTCTCCCAATCCCAATCATTGTGAACAAGAATAATAAGGAAACTTTGGTTGTGGTTATTTCTGTGCTTTTTGGTAGCTTTGCAATTCTCAATGTTGTATTGATTGTAGCAATATGTGTCAGCACCTCCATGATTCTTTGGTACAAGAAGAAGCTTAGAAGATTTAGCACAAGTGAGACTCGTGTTGAAACCAATCTGCGTTGCTTCACTTACGAAGAGCTTGAAAAAGCTGCCAATGGATTTGACAAAGAGCTAGGAAGGGGATCTTTTGGTATTGTTTATGAAGGAGTCATCAACAACAACACATGTTCCGAAACTCGCGTGGCGGTGAAAAAGTTGAACAATTTTGTGTTGGATCAAGCTCATAAGGAATTCAGAAATGAAGTGAATGTCATCGGTCTCACTCATCACAAGAGTTTGGTTCGTTTACTAGGATTTTGTGAGGGTGGATCTGAAAGATTGTTGGTTTATGAGTACATGAGCAATGGCACTTTGGCGAATTTACTTTTCAATACTGATGAGGAGAAACAGAAACCAAGTTGGAAACTAAGACTTGAAATTGCAATAGGGGTAGCTAGAGGACTTGTGTATTTACATGAAGAGTGCATCACTAAGATCATCCATTGTGACATAAAGCCTCAAAACATACTCCTTGATGATTATTTCAATGCAAGAATTTCTGACTTTGGATTAGCCAAGCTGTTAAACATGAATGAGAGCAAAACCAATATTGGCATAAGGGGAACAAAAGGGTATGTTGCAGTTGAATGGTTTAAAAACATGCCTATCACAGCTAAGGTGGATGTGTACAGTTATGGAGTAGTGCTACTTGAGATAATTTCATGTAGAAGGTGCGTTAAAGAAATGGATCCTGAAGATGAAAAGCAAGCTATATTAACCAAATGGGCTTATGATTGCTACAAAGAAGGTGTTTTAGATGCCTTGGTTGAAGGTGACAATGAGGCATTGAAGGAGAAAGAAATGTTAGAGAAACTGGTAATGATTGCTCTTTGGTGTGTTCAAGAGGATCCACATCTTAGACCAACCATGAGAACTGTGGTACTTATGCTCGAGGGTACTGTTGAAGTGCAAGCTCCACCGTACCCTTCACAAATTAGTATTCAATATTGTGTAAGTTAG	2235	0.3915	MEKTKANVTRSRNHAIERFWFLPVKESPVPSRVAAQTKSTLATGDSFTARTKTSQWLFSPSGDFAFDNPAPKGSKVELTAKDGLVLTSPNGVGLWNTTDVLSDGISHGVLNDTGNFVLQDDDFKNLWETFNFPRDTLLPSQVLEKGVKLSSMLKETNFSKGRFELHLQNDGDLVMYSINLPSSYVNENYYESSIVGSNTSSAGAQLVFDSSGKLVQWSVIILSLLAVVFVDTIAFAFWEMIKRPTCQCPKSYSLVDPDDLYGSCKPDFIQEYEEDELSEKSNDLYDFEILSETDWPLSDYVLQRPFTEEQCRKSCLEDCLCSVAIFRISDSCWKKKLPLSNGKYDPTLTKAKVFLKVRKDNTSIASLPIPIIVNKNNKETLVVVISVLFGSFAILNVVLIVAICVSTSMILWYKKKLRRFSTSETRVETNLRCFTYEELEKAANGFDKELGRGSFGIVYEGVINNNTCSETRVAVKKLNNFVLDQAHKEFRNEVNVIGLTHHKSLVRLLGFCEGGSERLLVYEYMSNGTLANLLFNTDEEKQKPSWKLRLEIAIGVARGLVYLHEECITKIIHCDIKPQNILLDDYFNARISDFGLAKLLNMNESKTNIGIRGTKGYVAVEWFKNMPITAKVDVYSYGVVLLEIISCRRCVKEMDPEDEKQAILTKWAYDCYKEGVLDALVEGDNEALKEKEMLEKLVMIALWCVQEDPHLRPTMRTVVLMLEGTVEVQAPPYPSQISIQYCVS*	745

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa4g4762	744	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	241	739	-	-
	Psa4g4762	744	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	68	214	-	-
	Psa4g4762	744	PIRSF	SRK	234	743	IPR024171	GO:0004674
	Psa4g4762	744	PIRSF	SRK	61	232	IPR024171	GO:0004674
	Psa4g4762	744	Gene3D	Transferase(Phosphotransferase) domain 1	525	730	-	-
	Psa4g4762	744	SUPERFAMILY	alpha-D-mannose-specific plant lectins	71	176	IPR036426	-
	Psa4g4762	744	ProSitePatterns	Protein kinases ATP-binding region signature.	450	477	IPR017441	GO:0005524
	Psa4g4762	744	Gene3D	-	33	132	IPR036426	-
	Psa4g4762	744	ProSiteProfiles	Bulb-type lectin domain profile.	7	131	IPR001480	-
	Psa4g4762	744	Gene3D	-	134	218	IPR036426	-
	Psa4g4762	744	ProSiteProfiles	Protein kinase domain profile.	444	726	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa4g4762	744	SUPERFAMILY	Protein kinase-like (PK-like)	427	735	IPR011009	-
	Psa4g4762	744	Pfam	Protein tyrosine and serine/threonine kinase	446	720	IPR001245	GO:0004672\|GO:0006468
	Psa4g4762	744	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	68	214	-	-
	Psa4g4762	744	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	241	739	-	-
	Psa4g4762	744	SMART	serkin_6	444	722	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa4g4762	744	CDD	STKc_IRAK	450	724	-	-
	Psa4g4762	744	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	571	583	IPR008271	GO:0004672\|GO:0006468
	Psa4g4762	744	Gene3D	Phosphorylase Kinase; domain 1	418	524	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa4g4762	Psa-Chr4	418305111	418308605	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa4g4762	375	727	Receptor kinase-like Gene Family	AT5G45780	37.989	1.54e-69	237

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Psa4g4762		PK_Tyr_Ser-Thr	1.5e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa4g4762	-		-	mtr:MTR_8g011410	909.442