Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4757 ATGGATTCTCCTTCTTTTTCTTTCTCTCTTTCTTCTCCTTCTCCTTCTTCTTTATCCTCCATTTCTCGATTCATGCACGACGTGTTCATCAATTTTAAACGAGAAGACACTAGCAAGACTTTCGTTTCTGATCTCGACGTTGCCCTCTCCAAAGCCGGAATCGAATCTTACATCGATTATCACCGCCATAATGGAACCGATCTGGATCCAGAACTATTGGAAGCAATAGAAGAGGCTCGTATTTCTATAATTGTTTTCTCCAAAAACTATGCAGAATCTAGTTGGTGTCTTAACGAGTTGGAAAGAGTTATGGAATGCCGCGGAACTCTTGGCCAATTTGTTGTCCCTGTGTTTTATGATGTTAACGCTTCCGATGTTCGTCACCAGAAGGGTGATTTTGGAAAGGTTTTGAGGGCTACTGCAAAAGAAGCATACTTTCGTTCACAAGGAAAAGAGAAGATGAAAAATGTGTTGTCAAATTGGAGCAATGCACTCACCCAAGCTGCTAATTTGTCTGGTTTGCATGTCAGCAATTACAGGTATCAAGATGAACTAGTGCAGCAAATTGTTGAAAAGAAGCTTTTCATTTTCTCAAATGGAGGGCTTCTACCACCACATGAACAACAACATGCTCATTTACCACCTGGTTTTCGTTTCCACCCTACTGATGAAGAACTCATCACTTTCTACCTTCTCAAGAAAGTTCTTGACAACACTTTCACTGCAAGAGCCATAGCTGAAGTTGATCTCAACAAATGTGCAACCATGGGAGCTACCAGATTTGTGTCACTCTTCTTTATACCTAACGGCTCTACTCTCTCTCTCTCATTTCTCTCTTCTGCAGAGAAGCTTTTCATTTTCTCAAATGGAGGGCTTCTACCACCACATGAACAACAACATGCTCATTTACCACCTGGTTTTCGTTTCCACCCTACTGATGAAGAACTCATCACTTTCTACCTTCTCAAGAAAGTTCTTGACAACACTTTCACTGCAAGAGCCATAGCTGAAGTTGATCTCAACAAATGTGAACCATGGGAGCTACCAGAGAAAGCTAAGATGGGTGAGAAAGAATGGTACTTCTTCAGTTTACGTGACAGGAAGTACCCAACTGGGTTACGTACAAATCGAGCTACAGAAGCTGGTTATTGGAAAGCAACAGGGAAAGATAGAGAGATTTACAGTTCAAAAACCTACTCTCTTGTTGGTATGAAGAAAACCCTTGTTTTCTACAGAGGAAGAGCACCAAAAGGTGAAAAGAGTAACTGGGTTATGCATGAATATCGACTTGAAGGAAAATTTACCTACCATTTCCTCTCTAGAAACTCCAAG 1332 0.4107 MDSPSFSFSLSSPSPSSLSSISRFMHDVFINFKREDTSKTFVSDLDVALSKAGIESYIDYHRHNGTDLDPELLEAIEEARISIIVFSKNYAESSWCLNELERVMECRGTLGQFVVPVFYDVNASDVRHQKGDFGKVLRATAKEAYFRSQGKEKMKNVLSNWSNALTQAANLSGLHVSNYRYQDELVQQIVEKKLFIFSNGGLLPPHEQQHAHLPPGFRFHPTDEELITFYLLKKVLDNTFTARAIAEVDLNKCATMGATRFVSLFFIPNGSTLSLSFLSSAEKLFIFSNGGLLPPHEQQHAHLPPGFRFHPTDEELITFYLLKKVLDNTFTARAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFTYHFLSRNSK 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4757 444 SUPERFAMILY NAC domain 209 253 IPR036093 GO:0003677|GO:0006355
Psa4g4757 444 Gene3D - 20 198 IPR035897 -
Psa4g4757 444 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2 207 253 - -
Psa4g4757 444 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2 297 435 - -
Psa4g4757 444 SMART till_3 25 171 IPR000157 GO:0007165
Psa4g4757 444 Pfam TIR domain 26 192 IPR000157 GO:0007165
Psa4g4757 444 ProSiteProfiles NAC domain profile. 303 444 IPR003441 GO:0003677|GO:0006355
Psa4g4757 444 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 173 IPR035897 -
Psa4g4757 444 Pfam No apical meristem (NAM) protein 214 253 IPR003441 GO:0003677|GO:0006355
Psa4g4757 444 Pfam No apical meristem (NAM) protein 304 430 IPR003441 GO:0003677|GO:0006355
Psa4g4757 444 ProSiteProfiles TIR domain profile. 24 197 IPR000157 GO:0007165
Psa4g4757 444 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 297 435 - -
Psa4g4757 444 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 207 253 - -
Psa4g4757 444 Gene3D NAC domain 312 443 IPR036093 GO:0003677|GO:0006355
Psa4g4757 444 SUPERFAMILY NAC domain 299 439 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4757 Psa-Chr4 418183571 418189318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4757 296 444 NAC Transcription Factor Family AT5G53950 85.235 2.57e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa4g4757 TIR 7.6e-32 CL0173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4757 - - cam:101501114 304.293