Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4742 ATGCTTCGGTTTCTCTCTAATGGGTCAAATCTTTATCAGCATTTTACATTTATCCCAGTTATTATAAAATCGTTGCAAGTTTTCACGCCTGCCACCTATTCGACAAATGTCCCAGCCGAAAATGAGGTTAAATTGAAAAAATTTAGAGATAAATGGAAAGATGCCACTGAAGTTTTGAGTAAATGGGGTTGTGATGAAGACGATTTGAAGAGAATATTTCGCCGTTGCCCCGCATTGCGTGATGCGGATCCTTCTCAGGTTCAATCTAAACTTTGCTTGCTTAGTGATTTGGGTTTAGGGTCATCTGAGCTAGTGAAGATTATCAATTGCAGGCCTAGATTTTTCAGGACACGGATTAACCATAAGTTCGAAGAGAGGCTTGACTCTCTTGTGTCATTGTTTGAGTCAAAGGAAATGCTTCACAAGGCCATTGCAAGAAACCCTTCATTGTTATGTGAAAATAGCTATGATATCGAAGGTATTGTTGCACAATATGAAGAGTTAGGTGTACCGAAACGGGACTTCATTAAAATGCTGATTTTGCGGCCGACGATCATTTCGAGGACTTCCTTTGACGATGAGAAACTTGAATATATAAGTAGAACTGGGGTTTCGAAGGATGCCAAATTGTATAAGTATGTGGTGACATTAATAGGAATTTCTCGTGTGGACACGATTCGTGAAAAGGTGTTGAATCTTGCAAAGTTTGGTTTTTCAGATGATGAGATACTTGGTCTTTTTGGGAGGTCTCCTAATATTTTGACCTTGTCGACTGATAAGGTTCAGAGGAACATGACTTTCATTTTAGGTACAATGAAGCTTGAAGCTAAGATGATCTTAAAGTACCCGTATCTCTTGTTTGCAAATATGGAGACTGTTTTGAAGCCAAGAGGGTTACTAGCAATGAAGATACAAGATATGGATTCCAAGTTGAAAATACCATCAATACTTAAGGCATTGAGGATGTCAGAGGAGAGGTTTTTAAAATTGTTTATTGAATGTCATGAGAAGGAAATTGCTGATGAATTAATGGAGTTTTATACAAGGACAAAAGAGTTTAAGAGATTAGCAGCTTCATCAAAGACTTGTACTACTAGAGGTTTCCCTTTTTGA 1113 0.3792 MLRFLSNGSNLYQHFTFIPVIIKSLQVFTPATYSTNVPAENEVKLKKFRDKWKDATEVLSKWGCDEDDLKRIFRRCPALRDADPSQVQSKLCLLSDLGLGSSELVKIINCRPRFFRTRINHKFEERLDSLVSLFESKEMLHKAIARNPSLLCENSYDIEGIVAQYEELGVPKRDFIKMLILRPTIISRTSFDDEKLEYISRTGVSKDAKLYKYVVTLIGISRVDTIREKVLNLAKFGFSDDEILGLFGRSPNILTLSTDKVQRNMTFILGTMKLEAKMILKYPYLLFANMETVLKPRGLLAMKIQDMDSKLKIPSILKALRMSEERFLKLFIECHEKEIADELMEFYTRTKEFKRLAASSKTCTTRGFPF* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4742 370 Pfam mTERF 176 328 IPR003690 GO:0003690|GO:0006355
Psa4g4742 370 Pfam mTERF 57 205 IPR003690 GO:0003690|GO:0006355
Psa4g4742 370 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 20 370 - -
Psa4g4742 370 SMART mt_12 276 314 IPR003690 GO:0003690|GO:0006355
Psa4g4742 370 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Psa4g4742 370 SMART mt_12 105 136 IPR003690 GO:0003690|GO:0006355
Psa4g4742 370 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Psa4g4742 370 SMART mt_12 70 100 IPR003690 GO:0003690|GO:0006355
Psa4g4742 370 SMART mt_12 141 171 IPR003690 GO:0003690|GO:0006355
Psa4g4742 370 PANTHER CGI-12 PROTEIN-RELATED 20 370 IPR003690 GO:0003690|GO:0006355
Psa4g4742 370 Gene3D Transcription termination factor 3, mitochondrial 136 341 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4742 Psa-Chr4 417815476 417817772 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa4g4742 mTERF 5.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4742 K15032 - gmx:100799629 466.463