Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4732 ATGCCGCCAAACCCTGCGGAGGTGAAACAAGCGGAGCTCTTGAGAAATGACGGAAACAATTACTTCAAGAAAAGCCGTTTTGGAGCAGCAATCGATGCTTACACTCAGGCAATAACATTTTGCCCTAATATTCCGGTTTATTATACGAATCGTGCTCTGTGCCATCTCAAGCGCAATGAATGGGAGAGGGTTGAGGAAGACTCTAGAAGAGCAATTCAGCTGGACAGCAATTCGGTTAAGGCGCACTATATGTTGGGACTTGCGTTGCTGCAGAAACATGAACTTCCAAAAGGGATCAGAGAATTGGAAAAGGCTTTGAATCTTGGGAGAGGTGCCAATCCACAAGGTTATATGGTAGAAGAAATATGGCAAGAGCTTGCGAAAGCAAAATACAAAGAGTGGGAACGTGCCTCATCCCAGCGATCTTGGGAATTGCAGAACTTGAAAGAAGCCTGTGTGTCTGCTCTAAAGGAAACAAATTTCATCGGAGACATCTCTGAATCAGAAGGATTTGTAGATGATGCTACTACTTCACATTTGAAACGTTTGGAGGCTATTGAAAGAGTTTTCAATAGAGCTGCAGAAGACGACATACCAGCTGAGATTCCAGATCATCTATGCTGTAGAATAACACTTGATATTTTTCATGATCCTGTAATCACTCCGAGTGGACTTACATATGAGAGAGCAGTACTTCTTGATCATCTTCAGAAGGTGGGTGGTTTTGATCCAATCACGAGGGAACATCTTGATCCGTCACAACTAATACCAAACTTGGCCATTAAGGAAGCAGTCCATGAGTTCTTGGACAGACATGGGTGGGCTTACAAGATAGATTAA 840 0.4321 MPPNPAEVKQAELLRNDGNNYFKKSRFGAAIDAYTQAITFCPNIPVYYTNRALCHLKRNEWERVEEDSRRAIQLDSNSVKAHYMLGLALLQKHELPKGIRELEKALNLGRGANPQGYMVEEIWQELAKAKYKEWERASSQRSWELQNLKEACVSALKETNFIGDISESEGFVDDATTSHLKRLEAIERVFNRAAEDDIPAEIPDHLCCRITLDIFHDPVITPSGLTYERAVLLDHLQKVGGFDPITREHLDPSQLIPNLAIKEAVHEFLDRHGWAYKID* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4732 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 278 IPR013083 -
Psa4g4732 279 Pfam U-box domain 202 274 IPR003613 GO:0004842|GO:0016567
Psa4g4732 279 SMART tpr_5 45 78 IPR019734 GO:0005515
Psa4g4732 279 SMART tpr_5 79 112 IPR019734 GO:0005515
Psa4g4732 279 SMART tpr_5 11 44 IPR019734 GO:0005515
Psa4g4732 279 CDD RING-Ubox_CHIP 202 268 IPR045202 -
Psa4g4732 279 PANTHER OS08G0113300 PROTEIN 8 278 - -
Psa4g4732 279 ProSiteProfiles U-box domain profile. 201 275 IPR003613 GO:0004842|GO:0016567
Psa4g4732 279 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Psa4g4732 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 278 IPR045200 GO:0000209|GO:0061630
Psa4g4732 279 SUPERFAMILY TPR-like 9 131 IPR011990 GO:0005515
Psa4g4732 279 Gene3D Tetratricopeptide repeat domain 5 141 IPR011990 GO:0005515
Psa4g4732 279 SMART Ubox_2 205 268 IPR003613 GO:0004842|GO:0016567
Psa4g4732 279 SUPERFAMILY RING/U-box 195 276 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4732 11 278 U-box Gene Family AT3G07370 64.925 1.25e-134 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4732 K09561 - gmx:100796519 461.84