Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4723 ATGGAAAACCAGTTCTTTTTGAATGCTGGATTCGAACCGTCACCTAATTCTTCGAACTCTCCAATGCCAACATGGCAATCGCTTTCTTCATCCATGGAAGTTCAACCGTCACTTCTGAATTCTTCCTCAAATCAATCCCAAGGTTGTTTTTTCAACCCAAATTGGGATAAGTCAACGGATCAAAATCTCAACTTTGATTCAGCACTTAGTTCAATTGTCTCGTCTCCTGCATCGCCTCCAACTGAGAATGTTATGATGAGAGAATTGATTGGAAAGTTGGGAAATTTTGGTGAGATCTCACAGCAACATTCTAAGCTCAACAACGTTGTTCCAATGATGAACCATTTAGGAGGAAAATCAATGCCTGAATTTTCACCTGATCCTGGTTTCGTTCAAAGGGCTGCAAAATTTTCTTGCTTTGGTAGCAAGAGTTTCAATGAGAGAAGTACTAACCAGTTGGTGATGATGAACAATGTTGAGTTAGCTCAAAGATCTGTTAATTTAATGGAAAATGGAGCCAAGTTACTGCCAAGAGTTTCGAGTAGTCCTTCCCTCAAAACAATTGGAACCCAAATGGTTAACAAAGATAACAAGAATTCACCATTGCAACAAGAATATGAGAGAATGGAAGTGGCTAATTCTCAAGAGGAATCTACAATCTCAGAGCAAAATACTCCAAATGGTGGTGAAATTGATGCGAAAGCTTCACTTGATATGAATTCAAGGAAAAGAAAAAGTTCTTTTAAAGGAAAAGCTTCAAACTCTTCCAATCCTAATAAGGGTGGTGAAGACTTAAATGCAAAGAAAAGCAAGTCAAATGAGGGTGAGAAAAATGAAAATGGTGGCATAAATATAGAGGAAGATTCCAAAAAAGTTGCTACTAATAATAATAATGCAGAGGAAGAGAAACAGAACAAGAGTAACTCAAAAGCTCCTGAACCTCAAAAAGATTACATTCATGTCAGAGCAAGAAGAGGGCAAGCTACTGACAGTCACAGCCTTGCCGAACGCGTCCGGAGGGAGAAAATAAGTGAAAGAATGAAACTTCTTCAAGATCTGGTACCAGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTACAACGTCAAGTTGAGTTTTTGTCTATGAAATTGTCTTCTGTTAACACAAGTATTGAAAGTGTTGTTGTATCAAAAGATATATTTCAATCAAATAATTCATTGCAAAACTCAATATTCCAATTAGATTCCACAGCACCATCTTTTTATGGGACACAAATTCAACAAAATCAAGTTATTCATAGTAACATTCCTAATGGAAGTGGGACACATTGCTTAGTGGATTCATTGGATTCTTCTTTGTGCCATAATCTTGGCATGCATTTACCTTCACTAAATGGATTTAATGAAAATGGATCTCAGTTTGCATTAACATTTTCTGAGGAGGACTTAAACACCATTGTTCAGATGGGATTTGGCCAAACTTCAAACAGGGAAACACCAATACACTCACCAAGTTTCAACGGTTCAAATCAAGCAACACAAATGAAAATTGAACTCTAA 1572 0.3677 MENQFFLNAGFEPSPNSSNSPMPTWQSLSSSMEVQPSLLNSSSNQSQGCFFNPNWDKSTDQNLNFDSALSSIVSSPASPPTENVMMRELIGKLGNFGEISQQHSKLNNVVPMMNHLGGKSMPEFSPDPGFVQRAAKFSCFGSKSFNERSTNQLVMMNNVELAQRSVNLMENGAKLLPRVSSSPSLKTIGTQMVNKDNKNSPLQQEYERMEVANSQEESTISEQNTPNGGEIDAKASLDMNSRKRKSSFKGKASNSSNPNKGGEDLNAKKSKSNEGEKNENGGINIEEDSKKVATNNNNAEEEKQNKSNSKAPEPQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTSIESVVVSKDIFQSNNSLQNSIFQLDSTAPSFYGTQIQQNQVIHSNIPNGSGTHCLVDSLDSSLCHNLGMHLPSLNGFNENGSQFALTFSEEDLNTIVQMGFGQTSNRETPIHSPSFNGSNQATQMKIEL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4723 523 Gene3D - 324 402 IPR036638 GO:0046983
Psa4g4723 523 MobiDBLite consensus disorder prediction 208 230 - -
Psa4g4723 523 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 105 IPR024097 GO:0006355
Psa4g4723 523 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 120 516 IPR024097 GO:0006355
Psa4g4723 523 MobiDBLite consensus disorder prediction 264 286 - -
Psa4g4723 523 Pfam Helix-loop-helix DNA-binding domain 331 378 IPR011598 GO:0046983
Psa4g4723 523 MobiDBLite consensus disorder prediction 293 315 - -
Psa4g4723 523 SMART finulus 333 383 IPR011598 GO:0046983
Psa4g4723 523 MobiDBLite consensus disorder prediction 9 39 - -
Psa4g4723 523 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 377 IPR011598 GO:0046983
Psa4g4723 523 CDD bHLH_AtBPE_like 317 396 - -
Psa4g4723 523 PANTHER BHLH TRANSCRIPTION FACTOR 120 516 - -
Psa4g4723 523 PANTHER BHLH TRANSCRIPTION FACTOR 2 105 - -
Psa4g4723 523 MobiDBLite consensus disorder prediction 208 315 - -
Psa4g4723 523 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 394 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4723 Psa-Chr4 416861269 416864492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4723 1 482 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.748 7.83e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa4g4723 HLH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4723 - - gmx:100801233 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3440 3 290737843 290741918 Psa4g4723 4 416861269 416864492 PCT