Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4720 ATGGATGAGGATTTCGATATTCCGGCTGTTGATCAGATGGACGACGATTTCGATTTCGCCGGAGCCGGCAACGCTCCTATTCTCAAAGTCGGCGAAGAGAAGGAAATCGGTGCACAGGGACTGAAGAAGAAGCTCCTCAAAGAAGGTGAAGGATGGGACACTCCAGAAGTTGGTGATGAAGTTCACGTTCACTATACCGGGACATTGCTTGATGGTACTAAGTTCGATTCTAGCAGAGATAGAGGAACTCCTTTCAACTTCACACTTGGACAAGGGCAAGTCATCAAAGGATGGGATGAAGGTATCATAACCATGAAGAAAGGTGAAAATGCCCTTTTCACCATCCCAGCTGAGTTGGCTTATGGGGAGTCTGGTTCTCCTCCAACAATTCCTCCCAATGCTACTCTTCAATTTGATGTTGAATTGCTGTCTTGGACTAGTGTGAAAGATATCTGTAAAGATGGAGGATTGTTTAAAAAGGTCCTTAAGGAGGGGGAGAAATGGGAAAACCCTAAGGATCTTGATGATGTCTTTGTTAAGTATGAAGCACATCTTGATGATGGGACGCTTGTAGGAAAATCTGATGGAGTCGAATTCACTGTGAAGGAGGGTCATTTTTGTCCTGCATTGTCAAAGGCTGTTAAGACCATGAAGAAGGGAGAGAAAGTGATTTTGACTGTGAAGCCACAATATGGATTTGGTGAGAAGGGTAGGCCAGCTCAGGGTGGTGAGGTTGCAGTTCCACCTAATGCAACATTGCAAATTACACTTGAGCTAGTTTCTTGGAAGACTGTTTCTGAAGTAACTGATGACAAGAAGGTCATCAAAAAGATCGTCGGGGAAGGAGAAGGATATGAACGTCCAAACGAGGGAGCTGTTGTGAAATTGAAACTAATAGGTAAGCTGCAAGATGGCACTGTATTTTTGAAGAAGGGTCATGGTGATGATGAAGCCGAGTTGTTTGAATTCAAAACAGATGATGAGCAAGTGATTGATGGGCTCGATAGAGCTGTAAGGACCATGAAGAAGGGTGAGGTAGCATTGTTGACCATTGCACCTGAGTATGCTTTTGGTTCAACAGAGACTCAGCAGGAATTGGCAGTGGTTCCTCCTAATTCAACCTTGCATTATGAAGTTGAGCTAGTATCATTCGTAAAGGAAAAGGAGTCCTGGGACATGAACACTGAAGAGAAGATAGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGCCTTGTTCAAAGCCGGTAAATATGAAAGAGCTTCTAAAAGATACGAGAAGGCTGTGAAGTTCATAGAGTACGATACTGCTTTTGGCGAAGAGGAGAAGAAAAGTGCCAAGGCCTTGAAGGTTGCTTGTAATTTGAACGATGCAGCATGCAAGTTGAAGTTGAAAGATTATAAACAAGCAGTGAAATTGTGTACAAAGGTGCTGGAGCTTGAGACCACAAACGTGAAAGCTCTTTATAGAAGGGCTCAGGCATATATTCAGTTGACTGACTTAGATTTGGCCGAACTTGATATCAAGAAAGCTCTTGAGATTGACCCTAACAACAGGGATGTGAAGCTGGAGTACAAGACTTTGAAGGAAAAGGCGAAGGAGATCAACAAGAAAGACGCACAATTTTATGGGAATATGTTCAGCAAAATGAAAAAGTTGGATTCTCTCGACAGTAATAAATCGGCGCCAAAGGATGCTGAACCTATGAGTATTGACAGCAAGGCATAA 1728 0.4311 MDEDFDIPAVDQMDDDFDFAGAGNAPILKVGEEKEIGAQGLKKKLLKEGEGWDTPEVGDEVHVHYTGTLLDGTKFDSSRDRGTPFNFTLGQGQVIKGWDEGIITMKKGENALFTIPAELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGLFKKVLKEGEKWENPKDLDDVFVKYEAHLDDGTLVGKSDGVEFTVKEGHFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGRPAQGGEVAVPPNATLQITLELVSWKTVSEVTDDKKVIKKIVGEGEGYERPNEGAVVKLKLIGKLQDGTVFLKKGHGDDEAELFEFKTDDEQVIDGLDRAVRTMKKGEVALLTIAPEYAFGSTETQQELAVVPPNSTLHYEVELVSFVKEKESWDMNTEEKIEAAGKKKEEGNALFKAGKYERASKRYEKAVKFIEYDTAFGEEEKKSAKALKVACNLNDAACKLKLKDYKQAVKLCTKVLELETTNVKALYRRAQAYIQLTDLDLAELDIKKALEIDPNNRDVKLEYKTLKEKAKEINKKDAQFYGNMFSKMKKLDSLDSNKSAPKDAEPMSIDSKA* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4720 575 Gene3D Tetratricopeptide repeat domain 392 545 IPR011990 GO:0005515
Psa4g4720 575 SMART tpr_5 451 484 IPR019734 GO:0005515
Psa4g4720 575 SMART tpr_5 402 435 IPR019734 GO:0005515
Psa4g4720 575 SMART tpr_5 485 518 IPR019734 GO:0005515
Psa4g4720 575 PANTHER PEPTIDYLPROLYL ISOMERASE 384 555 - -
Psa4g4720 575 PANTHER PEPTIDYLPROLYL ISOMERASE 272 384 - -
Psa4g4720 575 PANTHER PEPTIDYLPROLYL ISOMERASE 1 270 - -
Psa4g4720 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 174 263 IPR001179 GO:0003755
Psa4g4720 575 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Psa4g4720 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 260 IPR001179 GO:0003755
Psa4g4720 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 54 143 IPR001179 GO:0003755
Psa4g4720 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 285 382 IPR001179 GO:0003755
Psa4g4720 575 SUPERFAMILY TPR-like 390 550 IPR011990 GO:0005515
Psa4g4720 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 291 385 IPR001179 GO:0003755
Psa4g4720 575 SUPERFAMILY FKBP-like 35 151 - -
Psa4g4720 575 Coils Coil 518 538 - -
Psa4g4720 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 272 384 - -
Psa4g4720 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 270 - -
Psa4g4720 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 384 555 - -
Psa4g4720 575 SUPERFAMILY FKBP-like 268 402 - -
Psa4g4720 575 Gene3D - 31 149 IPR046357 GO:0003755
Psa4g4720 575 SUPERFAMILY FKBP-like 149 266 - -
Psa4g4720 575 Pfam Tetratricopeptide repeat 486 518 IPR013105 -
Psa4g4720 575 MobiDBLite consensus disorder prediction 554 575 - -
Psa4g4720 575 Gene3D - 263 391 IPR046357 GO:0003755
Psa4g4720 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 58 146 IPR001179 GO:0003755
Psa4g4720 575 Gene3D - 150 262 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4720 Psa-Chr4 416730042 416734434 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4720 1 559 Calmodulin-binding Proteins AT3G25230 80.501 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4720 K09571 - gmx:100803189 973