Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4715 ATGGAAGATGACGGAGTTGACGATGTGAAGATTCCTCTGTTGCAATCTGTAGAAGAAAACGTCGTCGTTCGGACGGTTACGTTCCAAATTAGCGATATCAAGTGCGCTTCCTGTGTTAACTCTATTGAATCGGCGCTTGCGAATCTTAACGGCGTTAAAAGTATTGCAGTTTCGTCACTTGACGGCCGCGCCGCCATCAAATTCGTTCCCAAACTCATAACTGCAAAAAGAATAAAAGAACGTATAGAAGAGAGTGGGTTTAAGGTTAATGAGGTTCATGATCATGACCAAGACATATCTGTGTGCCGAATCAGGATTAAAGGAATGGCATGTACAAGCTGTTCCGAGTCTGTTGAGAAGGCACTTAAAATGGTTGATGGAGTGAAAAGGGCAATAGTTGGTTTAGCTCTGGAGGAGGCAAAAGTGCATTATGACCCTAGCCTTGCCGATCCTGAAAAAATAATTGAAGCTATAGAAGATGCCGGCTTTGGAGGAGAACTTATTAGTTCTGGGAATGACGCGAACAAAGTTCATCTAAAACTTGAAGGGATTGATACTGAAGAAGAGGCTAATGTGTTAGTGTCTTACCTTGAGTTAGCTGCAGGTGTGAATCGAGTTGAAATGGACTTTTCTGAACTTATAGTCACGATTAGCTATGTTCCCGATATTACAGGTCCGAGAACTCTTATTCATTGTGTTCAGGAAGCTAGCCGTGGTTCCAAGGTGTATCAAGCAACTTTGTACTCTCCTTCAGGACAAAGAGAACGGGATAAAGTGAATGAAATTCGCATGTATAGAAATCAGTTTTTGTTCAGCTGCTTGTTTTCTGTACCTGTGTTTGTGTTTGCCATGGTGCTTCCCATGCTTCCTCCATATGGCAACTGGTTGAACTATAAGCTTCATAATATGCTTACTCTTGGGTTGTTTTTAAGATGGATCCTTTGCACGCCCGTGCAGTTCATAGTTGGAAAAAGGTTCTATGTGGGATCATATCATGCACTGAGGAGAAGATCTGCTAACATGGATGTTCTGGTTGCGTTGGGCACTAATGCTGCTTATTTTTACTCATTATATATTGTAATTAAAGCGCTGACTTCAGATACATTTCAAGGACAAGATTTTTTTGAGACCAGTTCCATGTTAATATCCTTTATTCTATTAGGAAAATATTTGGAGATTGTGGCTAAAGGGAAAACATCAGATGCTTTGGGAAAGCTAACACAACTTGTTCCTGATAAAGCTTATTTAGTAGTAATTGACACTGATGCAAACATCATCACAGAGACAGAAATTGACACTCAACTTATCCAAAAGAATGACATAATTAAGATTGTGCCTGGGGCTAAAATTCCTATCGATGGTATTGTTATAAAAGGGCAAAGCTATGCAAATGAAAGTATGATCACAGGGGAGGCTAGACCCATTGCCAAAAGTCCAGGAGACAAGGTTATCAGTGGAACAATCAATGAGAATGGCTGCTTGTTGGTTAAAGCTACACATGTTGGATCAGACACTGCCCTTTCTCAAATTGTTCAACTCGTAGAAGCTGCTCAGCTTGCCAAAGCACCAGTTCAAAAACTTGCGGACGATATTTCACGGGTTTTTGTTCCAATTGTGGTTGTTATAGCACTCACAACTTGGCTGGGGTGGCTCATTCCTGGGGAAGCAGGTTTTTACCCTAAACATTGGATACCAAAAGGAATGGATGCATTTGAGCTTGCTTTGCAGTTTGCAATTTCTGTGTTAGTCGTTGCTTGCCCATGTGCTTTGGGTCTAGCTACACCAACTGCAGTCATGGTGGCTTCAGGCATAGGTGCTTCTCAAGGAGTGCTCATCAAAGGTGGAGATGCACTGGAGAAGGCACACAAGGTAAAGACTATTGTATTTGATAAGACTGGGACACTAACAGTTGGGAAGCCAGCAGTAGTCAGTGCAGTGCTGTTTCCTGAATTTTCCATGGAGGTGTTATGTGACATGGCAATTTCGGTGGAGGCAAGTAGCGAACACCCCATAGCAAAAGCTGTTGTGGCGCACGCAAAAGACCTTCGCAAGAAGTTTGGTTCTTGCCCTGAGGAAGTGCCAGATGTTGTTGATTTTGAGGTACACATGGGAGCCGGGGTAAGTGGAAAAGTTGGTGATAAAACAGTTTTAGTTGGAAACAGGAGACTCATGAATGCTTGTAATGTTAAAATATCTTCTGCGGCTGAAAAGTACATCTCTGAAAACGAGAACCTGGCTAGAACTTGTGTTTTAGTTTCAATTAATGGAAAGATTGCCGGAGCATTCTCTGTATCTGATCCGGTAAAGCCAGAGGCTAAACGTGTTATATCATTTCTCCGCTCCATGGGTATCACAAGCGTCATCGTGACCGGAGATAACCATGCTACTGCAACTGCTATTGCAAATGAAGTTGGTATTGACCAGGTCTTTGCTGAGACAGATCCAGTAGGCAAAGCTGATAAGGTGAAAGAATTGCAGATGAAGGGAATGACTGTGGCAATGGTAGGTGATGGAATAAATGACTCTCCGGCTTTGGTTGCTGCTGATGTCGGTATGGCTATAGGTGCTGGAACTGATGTAGCTATAGAAGCAGCTGATATAGTTCTGGTCAAAAGCAATTTGGTAGATGTGATTACAGCCATAGATCTCTCTAGAAAGACCATGTCTCGTATCAGACTGAACTACATTTGGGCTCTTGGTTACAACATTTTAGGCATGCCAATTGCCGCTGGTGTTTTGTACCCATTTACCGGAATCAGATTGCCACCATGGCTTGCTGGTGCTTGCATGGCTGCATCTTCTCTTAGTGTGGTTTCTTCATCTCTTTTACTGCAGTTCTATAAAAAACCTTTTCATGTTGAATCCATTTAA 2871 0.4232 MEDDGVDDVKIPLLQSVEENVVVRTVTFQISDIKCASCVNSIESALANLNGVKSIAVSSLDGRAAIKFVPKLITAKRIKERIEESGFKVNEVHDHDQDISVCRIRIKGMACTSCSESVEKALKMVDGVKRAIVGLALEEAKVHYDPSLADPEKIIEAIEDAGFGGELISSGNDANKVHLKLEGIDTEEEANVLVSYLELAAGVNRVEMDFSELIVTISYVPDITGPRTLIHCVQEASRGSKVYQATLYSPSGQRERDKVNEIRMYRNQFLFSCLFSVPVFVFAMVLPMLPPYGNWLNYKLHNMLTLGLFLRWILCTPVQFIVGKRFYVGSYHALRRRSANMDVLVALGTNAAYFYSLYIVIKALTSDTFQGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVVIDTDANIITETEIDTQLIQKNDIIKIVPGAKIPIDGIVIKGQSYANESMITGEARPIAKSPGDKVISGTINENGCLLVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADDISRVFVPIVVVIALTTWLGWLIPGEAGFYPKHWIPKGMDAFELALQFAISVLVVACPCALGLATPTAVMVASGIGASQGVLIKGGDALEKAHKVKTIVFDKTGTLTVGKPAVVSAVLFPEFSMEVLCDMAISVEASSEHPIAKAVVAHAKDLRKKFGSCPEEVPDVVDFEVHMGAGVSGKVGDKTVLVGNRRLMNACNVKISSAAEKYISENENLARTCVLVSINGKIAGAFSVSDPVKPEAKRVISFLRSMGITSVIVTGDNHATATAIANEVGIDQVFAETDPVGKADKVKELQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLVKSNLVDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFTGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPFHVESI* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4715 956 PRINTS P-type cation-transporting ATPase superfamily signature 464 478 - -
Psa4g4715 956 PRINTS P-type cation-transporting ATPase superfamily signature 628 642 - -
Psa4g4715 956 PRINTS P-type cation-transporting ATPase superfamily signature 760 771 - -
Psa4g4715 956 PRINTS P-type cation-transporting ATPase superfamily signature 782 792 - -
Psa4g4715 956 PRINTS P-type cation-transporting ATPase superfamily signature 835 854 - -
Psa4g4715 956 PRINTS P-type cation-transporting ATPase superfamily signature 858 870 - -
Psa4g4715 956 ProSitePatterns Heavy-metal-associated domain. 30 59 IPR017969 GO:0046872
Psa4g4715 956 PRINTS Copper-transporting ATPase 1 signature 25 50 - -
Psa4g4715 956 PRINTS Copper-transporting ATPase 1 signature 51 74 - -
Psa4g4715 956 PRINTS Copper-transporting ATPase 1 signature 80 100 - -
Psa4g4715 956 PRINTS Copper-transporting ATPase 1 signature 124 145 - -
Psa4g4715 956 ProSiteProfiles Heavy-metal-associated domain profile. 25 91 IPR006121 GO:0046872
Psa4g4715 956 SUPERFAMILY Calcium ATPase, transmembrane domain M 373 621 IPR023298 -
Psa4g4715 956 CDD HMA 104 164 IPR006121 GO:0046872
Psa4g4715 956 Gene3D - 396 518 - -
Psa4g4715 956 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 381 912 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa4g4715 956 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 16 953 - -
Psa4g4715 956 ProSitePatterns E1-E2 ATPases phosphorylation site. 630 636 IPR018303 -
Psa4g4715 956 CDD HMA 27 89 IPR006121 GO:0046872
Psa4g4715 956 Gene3D - 20 90 - -
Psa4g4715 956 TIGRFAM TIGR00003: copper ion binding protein 104 163 IPR006122 GO:0005507
Psa4g4715 956 TIGRFAM TIGR00003: copper ion binding protein 26 89 IPR006122 GO:0005507
Psa4g4715 956 Gene3D - 100 171 - -
Psa4g4715 956 Pfam haloacid dehalogenase-like hydrolase 624 849 - -
Psa4g4715 956 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 341 944 IPR027256 GO:0006812|GO:0016021|GO:0019829
Psa4g4715 956 SUPERFAMILY Calcium ATPase, transduction domain A 428 514 IPR008250 -
Psa4g4715 956 SUPERFAMILY HMA, heavy metal-associated domain 171 243 IPR036163 GO:0046872
Psa4g4715 956 SUPERFAMILY HMA, heavy metal-associated domain 24 94 IPR036163 GO:0046872
Psa4g4715 956 SUPERFAMILY HAD-like 626 941 IPR036412 -
Psa4g4715 956 SFLD C1.7: P-type atpase like 610 887 - -
Psa4g4715 956 SUPERFAMILY HMA, heavy metal-associated domain 97 171 IPR036163 GO:0046872
Psa4g4715 956 ProSiteProfiles Heavy-metal-associated domain profile. 101 167 IPR006121 GO:0046872
Psa4g4715 956 Pfam Heavy-metal-associated domain 27 88 IPR006121 GO:0046872
Psa4g4715 956 Pfam Heavy-metal-associated domain 104 163 IPR006121 GO:0046872
Psa4g4715 956 PANTHER ATP7, ISOFORM B 16 953 - -
Psa4g4715 956 Pfam E1-E2 ATPase 427 606 - -
Psa4g4715 956 Gene3D - 635 712 IPR023299 GO:0000166
Psa4g4715 956 Gene3D - 713 766 IPR023299 GO:0000166
Psa4g4715 956 SFLD p-type atpase 610 887 IPR044492 -
Psa4g4715 956 ProSitePatterns Heavy-metal-associated domain. 106 135 IPR017969 GO:0046872
Psa4g4715 956 Gene3D - 595 892 IPR023214 -
Psa4g4715 956 CDD P-type_ATPase_Cu-like 269 931 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4715 Psa-Chr4 416501264 416508259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4715 28 950 Primary Pumps ATPases AT1G63440 56.989 0.0 1061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4715 K17686 - gmx:100793894 1595.48