Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4680 ATGGCAGAAGCTGCAGCTGCAGCTGGGCAGACGTTATCAGCATTTGAGAGTGAGCTACGCCCTATTGACCGATATGCCATTCATTTTCTAGAGCTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGATACTGAATGGGAATTGGATCGCATTGAAAGTTCTCCGTTTGTAGGAATATTGGATAACATTCCCTTGAGAAATCGGGAAATTTCATCTTCAGTTTTGTTTGTTTGCTGTCATGCTAGGCCTTCGTTTCAAGGGCCACAACATCATAATATAGCGGCAACTCAAGAGGATGGTCAATTGCTTATGTATCCTGATCGTGATCATCAAGTTGATAAAAGCTTGATATCTCTTGTTAAGTCTGACAGAGCGGGTTTACATGTTAAAGACTATCAAGGTCGGTGGATTCTTGTGGATGTTGATTTGGGGCCTCAACAGGCTATTGTTTATCCTGGGTTTGCTCTTTATCAAACAACAGCAGGATATGTTAACCCTGCATTGCACAAAACTGAGATCAATAGGGAGGCTAACATGTATGGGAGGTGTTCTTTAGGGTTCAAACTTTTGCCTAAATCAATGACTAGTCTTGATTGTTCGGAAATGAGAGCGGCCGGTTACGGAATTGAAACTCAGTTCCAGCTTCCTGTTCCTATTGATGATTTTATGCAACGTTCGCATCCAACTGACCACCTTTTTAATAGGCCTGCTTTTCAATGCTTCAATTTCCAACCAACGCATGACAGATCCATGAAGACTTTGATACGGAGGAGGATGCAATATTATGTGCAGTTGTTCATGAGTATGGGTGAGTGTGCTCAAGCATTACAAGAGAATGCTATGTGCGCTTTAGCAAATATTTCCGGTGGTTTGTCTTATGTCATATCTAGCCTCGGTCAAAGCCTCGAGTCATGCTCTTCTCCTACACAAATTGCCGACACTTTAGGAGCTATAGCATCAGCTCGCCGAATCTACCAAACCGTCAGATCCTTTGCAAATTCCGATGCAAAACGTTTGCTTGTTGGTTTGATAACTGTGGCTGCCAATGAAGTGCAAGATGAGCTTATAAAAGCTCTGTTGACATTATGCAAAAGTGAATGCAGTCTATGGCGTGCGCTTCAAGGCCGTGAAGGAGTTCAGCAATTGATATCACTTCTGGGACTTTCATCAGAGCAGCAACAAGAATGTGCTATTGCCTTGCTCTGTTTATTGTCTGATGAAAATGTTGAAAGTAAATGGGCCATTACTGCTGCTGTTGGTATACCTCCACTTGTTCAAATTTTGGAGTCGGGATCTGCCAAAGCAAAGGAAGACTCGGCAGCAATTCTTAGGAACTGGATTTGCTGTCCACTGAAAGATGCTGAAGGAATTAATAATAGGATGGACAAGCACCCCTAA 1419 0.4271 MAEAAAAAGQTLSAFESELRPIDRYAIHFLELWDPIIDKAALESEVRIEDTEWELDRIESSPFVGILDNIPLRNREISSSVLFVCCHARPSFQGPQHHNIAATQEDGQLLMYPDRDHQVDKSLISLVKSDRAGLHVKDYQGRWILVDVDLGPQQAIVYPGFALYQTTAGYVNPALHKTEINREANMYGRCSLGFKLLPKSMTSLDCSEMRAAGYGIETQFQLPVPIDDFMQRSHPTDHLFNRPAFQCFNFQPTHDRSMKTLIRRRMQYYVQLFMSMGECAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQIADTLGAIASARRIYQTVRSFANSDAKRLLVGLITVAANEVQDELIKALLTLCKSECSLWRALQGREGVQQLISLLGLSSEQQQECAIALLCLLSDENVESKWAITAAVGIPPLVQILESGSAKAKEDSAAILRNWICCPLKDAEGINNRMDKHP* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4680 472 SUPERFAMILY ARM repeat 282 456 IPR016024 -
Psa4g4680 472 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 58 267 - -
Psa4g4680 472 Gene3D - 276 464 IPR011989 -
Psa4g4680 472 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 58 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4680 Psa-Chr4 415076283 415078168 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4680 328 452 U-box Gene Family AT3G46510 33.071 2.41e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4680 - - gmx:100807442 383.645