Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4670 ATGAACAACAACAATAGAGCGAGATATCCACCTCCCGGGATCGCTCCTGGACGCGGAGGAGCGAATCCCAACGTGAATCTGAACCAGAACCCGAACCTGAACCATCAGTTTCAGCAAAGACCACCTTACCACCACCATAACCAACAGCAACATCACCAGCCGCAACAGCACCAGCCACAACATCAGCAGCAGCAGTACTACCATCAGTTTCAGCAAAGACCACCTTACCACCACCATAACCAACAGCAACATCACCAGCCGCAACAGCACCAGCCACAACATCAGCAGCAGCAGTACTATGCGCAGAGACAAATGGTGCAGCAACACCAGCAGCAACATCAGCAGCAGCAGCAGCAACAACAGTGGCTGAGAAGGGCACAGTTGGGTGGTTCGGAATCCAACGCTGCCGAGGAGGTCGAGAAGTCCGTGCAGTCTGAAGCCAATGACTCAAGTTCTCAAGACTGGAAGGCCGGACTAAAGATTCCACCAGCTGATACACGCTTTAGGACAGAGGATGTTACAGCAACTAAAGGAAACGAATTTGAGGATTACTTTTTGAAACGGGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCCCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGCACAACATATCCTGTTACTGTGAAGGACTTCAAAGATAGGTTTCTTAACAAACCATATGTCATTAACCTTATGGATGAGCTCACGCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTTCACTGCTTAAATACTCTCTTTTCTAAGCTACAAATAAACCAGTCAATTATCTTCTGCAACTCAGTGAATCGGGTTGAACTGCTTGCCAAGAAAATCACTGAACTGGGGTATTCATGTTTCTATATTCATGCAAAGATGCTGCAAGACCATCGTAATAGAGTATTTCATGATTTCCGTAATGGTGCATGCCGAAATCTTGTCTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATAAACTTTGATTTTCCCAAGAACTCGGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGATTTGGCCACCTTGGTTTAGCGGTGAACTTGATCACTTACGAGGACCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACACATTGATCAAGCATTTTATTGCCGGTGA 1233 0.4485 MNNNNRARYPPPGIAPGRGGANPNVNLNQNPNLNHQFQQRPPYHHHNQQQHHQPQQHQPQHQQQQYYHQFQQRPPYHHHNQQQHHQPQQHQPQHQQQQYYAQRQMVQQHQQQHQQQQQQQQWLRRAQLGGSESNAAEEVEKSVQSEANDSSSQDWKAGLKIPPADTRFRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGTTYPVTVKDFKDRFLNKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4670 410 Gene3D - 131 234 IPR027417 -
Psa4g4670 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 179 207 IPR014014 GO:0003724
Psa4g4670 410 Gene3D - 241 409 IPR027417 -
Psa4g4670 410 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 93 217 - -
Psa4g4670 410 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 217 410 - -
Psa4g4670 410 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 217 410 - -
Psa4g4670 410 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 93 217 - -
Psa4g4670 410 CDD SF2_C_DEAD 248 377 - -
Psa4g4670 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 405 IPR027417 -
Psa4g4670 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 247 407 IPR001650 -
Psa4g4670 410 SMART helicmild6 287 368 IPR001650 -
Psa4g4670 410 MobiDBLite consensus disorder prediction 137 155 - -
Psa4g4670 410 MobiDBLite consensus disorder prediction 1 21 - -
Psa4g4670 410 MobiDBLite consensus disorder prediction 41 163 - -
Psa4g4670 410 MobiDBLite consensus disorder prediction 52 77 - -
Psa4g4670 410 Pfam Helicase conserved C-terminal domain 262 368 IPR001650 -
Psa4g4670 410 MobiDBLite consensus disorder prediction 85 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4670 Psa-Chr4 414093569 414103931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4670 212 403 Eukaryotic Initiation Factors Gene Family AT3G19760 39.175 5.79e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4670 K12614 - mnt:21400322 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g4670 4 414093569 414103931 Psa4g4670 4 414093569 414103931 ECH